Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00518 ATGGGGAGGAAGAAGAGAACCGATGCTGGTGGTGAAAGTTCTGAGTCTCAAGATGGTGGTGGTCGTGGCTCCCAAAGATCAGCTGAAAGGAGAGACACCCCACAGCAACATGGTGGTAGTGGGTACCAGCGTGGGAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGCCAAGGTGGTGGAGGGCGTGGCCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCCGATCACCAAGGCAGGGGTAGAGGTGGGCCATATCATGGAGGACATAACAACTATGGTGGTGGTGGTGGTAATCGTGGTGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGTCACTAGTTCCCGAGCTGCACCAAGCAACCCCAATGTATCAAGGAGGGATGACTCAGCCAGTCTCATCTGGGGCGAGTTCTTCCTCCCATCCATCTGACACTTCATCAATTGATCAACAATTTCAACAAATTTCCATTCAACAGGAGTCCTCTCAAAGTCAAGCAATTCAACCTGCACCACCATCTAGTAAATCCTTGAGATTCCCACTGAGACCAGGAAAGGGTAGCTCTGGCACAAGGTGTATTGTTAAGGCTAACCATTTCTTTGCTGAGTTACCCGACAAAGATCTTCATCAGTATGATGTTACTATTACCCCAGAAGTTACTTCACGTGTCTACAACCGAGCTGTAATGGAACAGCTAGTTAAATTATATAGAGTCTCACACCTTGGAGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTTACATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCTGGTGGACAAAGACGGGAAAGGGAATTTAAAGTTGTAATCAAATTGGCTGCACGTGCTGATCTACACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCCGATGCCCCTCAAGAAGCTCTTCAAGTTCTGGATATTGTATTACGAGAATTACCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAGGGGCTGGAAAGTTGGCGTGGTTTCTATCAGAGTATCCGCCCTACTCAAATGGGACTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCATGTCATTGAATTTGTCACTCAACTTCTCAATCGTGATGTGTCGTCCAGACCATTATCTGATGCTGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACATCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTCTGACATCACAAGCAACACGCGAGCTAACTTTCCCTGTCGATGAGAGAGGTACTATGAAGTCAGTGGTTGAGTACTTCTACGAAACGTATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAATTATCTACCGATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTTAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCTAAAGATAGAGAGGAAGACATTATGCAGACGGTACACCATAATGCATACCATAATGATCCATATGCCAAGGAGTTTGGAATCAAGATTAGTGAGAAGCTTGCTTCTGTCGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCTCAAGTTGGACAATGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGCTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTTCTTCCCCCTATTTTTGCTCGTCCAGATCATGTGGAAAAGGCCCTTAAAACTAGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATTTGCTTATTGTTGTATTACCAGATAACAACGGATCCCTTTATGGTGATTTAAAGCGTATCTGTGAAACTGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTTTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTAAAAATAAATGTTAAGGTTGGGGGAAGGAATACGGTTCTTGTTGATGCATTATCTAGGCGCATACCTTTGGTTAGCGACCGGCCTACCATTATATTTGGCGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCCAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAACTCATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGGGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTCGAGCAACTGGACAGAAACCTCAACGCATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACATTTGTGGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATACAGTCGATAAGAGTGGGAACATATTACCTGGCACGGTTGTCGATTCTAAAATTTGTCACCCCACGGAGTTCGATTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTATGGGATGAGAACAAGTTCACTGCTGATGGATTGCAGACCCTAACGAATAATCTTTGTTACACATATGCTAGGTGTACTCGCTCCGTTTCTATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCTTTCCGAGCTCGTTTCTATATGGAACCTGAAACCTCTGACAGTGGGTCAATTAGCAGTGAAGTTGCTGGACGTGGTGGCGTCGGTGGTGCTCGCAGTACACGGGCACCAGGTTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTCAAGAGGGTTATGTTCTATTGTTGA 3177 45.73 MGRKKRTDAGGESSESQDGGGRGSQRSAERRDTPQQHGGSGYQRGRGWGSQGGRGGQGGGGRGRGTSQHQHYGGPPDHQGRGRGGPYHGGHNNYGGGGGNRGGMGGGGIGGGPSSGGPSRSLVPELHQATPMYQGGMTQPVSSGASSSSHPSDTSSIDQQFQQISIQQESSQSQAIQPAPPSSKSLRFPLRPGKGSSGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFTSNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLHVIEFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVHHNAYHNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHTVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSEVAGRGGVGGARSTRAPGLNAAVRPLPALKENVKRVMFYC* 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3437238 3444869 - CsaV3_1G005180.1 Csa01g00518 515015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00518 1058 Pfam PAZ domain 400 525 IPR003100 GO:0005515
Csa01g00518 1058 Gene3D paz domain 389 514 - -
Csa01g00518 1058 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 88 1057 - -
Csa01g00518 1058 CDD Piwi_ago-like 554 1006 IPR045246 -
Csa01g00518 1058 Pfam Glycine-rich region of argonaut 73 181 IPR024357 -
Csa01g00518 1058 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Csa01g00518 1058 SMART DUF1785_2 343 395 IPR014811 -
Csa01g00518 1058 CDD PAZ_argonaute_like 395 509 - -
Csa01g00518 1058 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Csa01g00518 1058 MobiDBLite consensus disorder prediction 132 181 - -
Csa01g00518 1058 MobiDBLite consensus disorder prediction 1 196 - -
Csa01g00518 1058 Pfam Argonaute linker 1 domain 345 394 IPR014811 -
Csa01g00518 1058 Gene3D - 755 1058 IPR036397 GO:0003676
Csa01g00518 1058 SUPERFAMILY Ribonuclease H-like 681 1007 IPR012337 -
Csa01g00518 1058 MobiDBLite consensus disorder prediction 1010 1032 - -
Csa01g00518 1058 ProSiteProfiles PAZ domain profile. 396 510 IPR003100 GO:0005515
Csa01g00518 1058 Gene3D - 574 749 - -
Csa01g00518 1058 SUPERFAMILY PAZ domain 203 547 IPR036085 GO:0005515
Csa01g00518 1058 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Csa01g00518 1058 Pfam Argonaute linker 2 domain 536 582 IPR032472 -
Csa01g00518 1058 Pfam Mid domain of argonaute 593 667 IPR032473 -
Csa01g00518 1058 PANTHER PROTEIN ARGONAUTE 1A 88 1057 - -
Csa01g00518 1058 Pfam N-terminal domain of argonaute 200 334 IPR032474 -
Csa01g00518 1058 SMART PAZ_2_a_3 400 532 IPR003100 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00518 Csa-Chr1:3437238 Csa03g01284 Csa-Chr3:9816222 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00518 K11593 - csv:101212130 1924.83