Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00519 | ATGACCAGTACTACTACTCAACAACTCTCTGTTCTGTCTCTCATTTCCTTCATTCTTCTGATCTCTACCGCAGTTTCTTATTCAGAAGCCCATGGCTTAAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAAAAACAGACAACAACTCGCCACTTGTTCAGTAGGTTTCGCCGGAAAAATGACCAACAACATGGGAAGAAATCTCATGCACTACCAAGTCACTGACCCAAGCGATGACCCTATAAACCCACGTCCAGGTACTCTCAGATACGGCGCCACAATGATCAAACACAAAGTCTGGATCACATTTAAAAAAGACATGCACATTGTGCTTCAGAAGCCTCTTCTTGTCAGCAGCTTCACCGCCATCGACGGCCGAGGCTCCACCGTCCACATCACCGGAAACGCCTGTCTGATGGTGGTCAGAGCCACCAACATTATAATCCACGGCCTTATCATCCACCACTGCAAGTCTCAGGCGGCGGGTCAAGTCATGGGTCCCAATGCTAAGGTAATTTCACTTGGAAACGTGGACGGAGATGCCATCCGTTTAGTAACGGCCTCGAAAGTTTGGATTGACCACAACACGCTGTACCGGTGCGAGGATGGGTTGCTCGACGTCACCCGTGGGTCCACTGACATAACCATTTCCAACAATTGGTTCCGGGACCAAGACAAGGTTATTCTTCTTGGTCATGATGATGGCTATGTTAGAGATCGGAGCATGAGAGTCACTGTCCTCTATAACCATTTTGGACCAAATTGTAACCAAAGAATGCCCAGGATTCGATATGGGTATGCACACGTTGCAAACAATTTATACCAAGGTTGGACGCAATACGCAATCGGAGGGAGCATGAACCCGAGCGTGAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAGTCATATGGAGCACAGGGAAAGTAGAGGAGGCAAAATGGAAGTTTCACTCAGTGAGAGACGCATTTGAAAACGGAGCATCGTTTGCAGAAATTGGAGTGGGGAAAGGAAGAGTAAAGCCAAATTACAATCCCCAACAGCGGTTTCCAGTGGCAGATGCTAAGTGGATCAGAGCATTGACAAGCTCATCCGGGGCATTGCGCTGCACATCAAATTCTAAATGCTGA | 1155 | 47.53 | MTSTTTQQLSVLSLISFILLISTAVSYSEAHGLNMNAIDRCWRSNPYWRKNRQQLATCSVGFAGKMTNNMGRNLMHYQVTDPSDDPINPRPGTLRYGATMIKHKVWITFKKDMHIVLQKPLLVSSFTAIDGRGSTVHITGNACLMVVRATNIIIHGLIIHHCKSQAAGQVMGPNAKVISLGNVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRSMRVTVLYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQVIWSTGKVEEAKWKFHSVRDAFENGASFAEIGVGKGRVKPNYNPQQRFPVADAKWIRALTSSSGALRCTSNSKC* | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3450230 | 3451850 | + | CsaV3_1G005190.1 | Csa01g00519 | 515016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00519 | 384 | PRINTS | Pollen allergen Amb family signature | 58 | 75 | IPR018082 | - | |
Csa01g00519 | 384 | PRINTS | Pollen allergen Amb family signature | 120 | 136 | IPR018082 | - | |
Csa01g00519 | 384 | PRINTS | Pollen allergen Amb family signature | 184 | 205 | IPR018082 | - | |
Csa01g00519 | 384 | PRINTS | Pollen allergen Amb family signature | 264 | 283 | IPR018082 | - | |
Csa01g00519 | 384 | PRINTS | Pollen allergen Amb family signature | 286 | 305 | IPR018082 | - | |
Csa01g00519 | 384 | PRINTS | Pollen allergen Amb family signature | 355 | 378 | IPR018082 | - | |
Csa01g00519 | 384 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 381 | IPR045032 | GO:0030570 | |
Csa01g00519 | 384 | SUPERFAMILY | Pectin lyase-like | 35 | 375 | IPR011050 | - | |
Csa01g00519 | 384 | Pfam | Pectate lyase | 125 | 303 | IPR002022 | - | |
Csa01g00519 | 384 | PANTHER | PECTATE LYASE | 15 | 381 | - | - | |
Csa01g00519 | 384 | SMART | amb_all | 112 | 309 | IPR002022 | - | |
Csa01g00519 | 384 | Gene3D | - | 35 | 377 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00519 | Csa-Chr1:3450230 | Csa06g03495 | Csa-Chr6:28593144 | 3.19E-103 | dispersed | |
Csa01g00519 | Csa-Chr1:3450230 | Csa01g01041 | Csa-Chr1:6486533 | 1.67E-109 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00519 | K01728 | - | csv:101217103 | 729.554 |