Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00519 ATGACCAGTACTACTACTCAACAACTCTCTGTTCTGTCTCTCATTTCCTTCATTCTTCTGATCTCTACCGCAGTTTCTTATTCAGAAGCCCATGGCTTAAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAAAAACAGACAACAACTCGCCACTTGTTCAGTAGGTTTCGCCGGAAAAATGACCAACAACATGGGAAGAAATCTCATGCACTACCAAGTCACTGACCCAAGCGATGACCCTATAAACCCACGTCCAGGTACTCTCAGATACGGCGCCACAATGATCAAACACAAAGTCTGGATCACATTTAAAAAAGACATGCACATTGTGCTTCAGAAGCCTCTTCTTGTCAGCAGCTTCACCGCCATCGACGGCCGAGGCTCCACCGTCCACATCACCGGAAACGCCTGTCTGATGGTGGTCAGAGCCACCAACATTATAATCCACGGCCTTATCATCCACCACTGCAAGTCTCAGGCGGCGGGTCAAGTCATGGGTCCCAATGCTAAGGTAATTTCACTTGGAAACGTGGACGGAGATGCCATCCGTTTAGTAACGGCCTCGAAAGTTTGGATTGACCACAACACGCTGTACCGGTGCGAGGATGGGTTGCTCGACGTCACCCGTGGGTCCACTGACATAACCATTTCCAACAATTGGTTCCGGGACCAAGACAAGGTTATTCTTCTTGGTCATGATGATGGCTATGTTAGAGATCGGAGCATGAGAGTCACTGTCCTCTATAACCATTTTGGACCAAATTGTAACCAAAGAATGCCCAGGATTCGATATGGGTATGCACACGTTGCAAACAATTTATACCAAGGTTGGACGCAATACGCAATCGGAGGGAGCATGAACCCGAGCGTGAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAGTCATATGGAGCACAGGGAAAGTAGAGGAGGCAAAATGGAAGTTTCACTCAGTGAGAGACGCATTTGAAAACGGAGCATCGTTTGCAGAAATTGGAGTGGGGAAAGGAAGAGTAAAGCCAAATTACAATCCCCAACAGCGGTTTCCAGTGGCAGATGCTAAGTGGATCAGAGCATTGACAAGCTCATCCGGGGCATTGCGCTGCACATCAAATTCTAAATGCTGA 1155 47.53 MTSTTTQQLSVLSLISFILLISTAVSYSEAHGLNMNAIDRCWRSNPYWRKNRQQLATCSVGFAGKMTNNMGRNLMHYQVTDPSDDPINPRPGTLRYGATMIKHKVWITFKKDMHIVLQKPLLVSSFTAIDGRGSTVHITGNACLMVVRATNIIIHGLIIHHCKSQAAGQVMGPNAKVISLGNVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRSMRVTVLYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQVIWSTGKVEEAKWKFHSVRDAFENGASFAEIGVGKGRVKPNYNPQQRFPVADAKWIRALTSSSGALRCTSNSKC* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3450230 3451850 + CsaV3_1G005190.1 Csa01g00519 515016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00519 384 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Csa01g00519 384 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Csa01g00519 384 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Csa01g00519 384 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Csa01g00519 384 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Csa01g00519 384 PRINTS Pollen allergen Amb family signature 355 378 IPR018082 -
Csa01g00519 384 PANTHER PECTATE LYASE 18-RELATED 15 381 IPR045032 GO:0030570
Csa01g00519 384 SUPERFAMILY Pectin lyase-like 35 375 IPR011050 -
Csa01g00519 384 Pfam Pectate lyase 125 303 IPR002022 -
Csa01g00519 384 PANTHER PECTATE LYASE 15 381 - -
Csa01g00519 384 SMART amb_all 112 309 IPR002022 -
Csa01g00519 384 Gene3D - 35 377 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00519 Csa-Chr1:3450230 Csa06g03495 Csa-Chr6:28593144 3.19E-103 dispersed
Csa01g00519 Csa-Chr1:3450230 Csa01g01041 Csa-Chr1:6486533 1.67E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00519 K01728 - csv:101217103 729.554