Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00522 ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGA 513 46.59 MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKGDFCGSCKVQIGATPRP* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3459467 3462888 + CsaV3_1G005220.1 Csa01g00522 515019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00522 170 Gene3D - 54 169 IPR012677 -
Csa01g00522 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 153 IPR000504 GO:0003723
Csa01g00522 170 PANTHER RNA-BINDING PROTEIN 1 3 154 - -
Csa01g00522 170 SUPERFAMILY RNA-binding domain, RBD 75 153 IPR035979 GO:0003676
Csa01g00522 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Csa01g00522 170 SMART rrm1_1 90 165 IPR000504 GO:0003723
Csa01g00522 170 PANTHER TRANSFORMER-2-RELATED 3 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00522 - - K13195 csv:101214703 272.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00522 Csa-Chr1:3459467 Csa06g00415 Csa-Chr6:3611291 8.99E-18 dispersed
Csa01g00522 Csa-Chr1:3459467 Csa01g00294 Csa-Chr1:1841084 9.07E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00047 Csa01g00522 Chy12g01563 Cme12g02019 Blo13g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013007 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00522 Csa_Chr01 FPKM 2.71579 2.419647 3.165914 1.840519 2.051654 1.816424 1.718553 0.341666 0.231642 0.481012