Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00533 ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAACGCTTCTTTCCCTCTTCAATTGCTAGAGAAGAAAGAATATGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCCCCTAAGAGGACTTCTACTAAGGATCGCCACACCAAAGTCGATGGTCGAGGCCGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCCGATGGCGAAACGATCGAATGGCTTCTTCAGCAGGCTGAGCCTGCTGTTATCGCCGCAACGGGAACTGGAACCATACCGGCTAACTTCAACTCTCTTAATACGTCGTTAAGAAGATCGGCTACAAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTATCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGACACAATTACCAAAAGAAGATCATCAGTACCATCTTCACCAATCCACCACCACCGGAGTAGTCCCCCCCACTACTATTCCGGCAAACTTTTGGATGCTTTCCGACCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCGGCTAATCAAGACGGCTCTTTATTCAGATCAGGACAACCCTCACCCTCCGGTGGCTTACGTTTGTCGAATAATATTCTCGGCGGCCCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACAACGATCATGATGATGATGATGATGATCATAATGGACACTTGAATATCTATGCCACCCAAAATCCACCGCATGGGGCAGCGCCGGACACCGGCGTCTCGTAA 900 49.0 MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITTQLPKEDHQYHLHQSTTTGVVPPTTIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSGQPSPSGGLRLSNNILGGPAPLTLLPGKPLSLGPTAGAARRGNLNNDHDDDDDDHNGHLNIYATQNPPHGAAPDTGVS* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3515792 3517790 - CsaV3_1G005330.1 Csa01g00533 515030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00533 299 Pfam TCP family transcription factor 47 153 IPR017887 -
Csa01g00533 299 MobiDBLite consensus disorder prediction 43 61 - -
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 160 287 IPR005333 GO:0003700
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 155 IPR005333 GO:0003700
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP23 38 155 - -
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP23 160 287 - -
Csa01g00533 299 MobiDBLite consensus disorder prediction 264 279 - -
Csa01g00533 299 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Csa01g00533 299 MobiDBLite consensus disorder prediction 247 299 - -
Csa01g00533 299 MobiDBLite consensus disorder prediction 1 61 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00533 Csa01g00228 CCT
Csa01g00228 Csa01g00533 ECH
Csa01g00533 Csa01g00228 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00533 Csa-Chr1:3515792 Csa05g02171 Csa-Chr5:24700297 1.65E-43 dispersed
Csa01g00228 Csa-Chr1:1459334 Csa01g00533 Csa-Chr1:3515792 2.01E-08 wgd
Csa01g00533 Csa-Chr1:3515792 Csa05g02440 Csa-Chr5:26363833 6.09E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30652 PF03634 TCP 8.60E-36 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00533 - - csv:101218047 575.859