Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00533 ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAACGCTTCTTTCCCTCTTCAATTGCTAGAGAAGAAAGAATATGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCCCCTAAGAGGACTTCTACTAAGGATCGCCACACCAAAGTCGATGGTCGAGGCCGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCCGATGGCGAAACGATCGAATGGCTTCTTCAGCAGGCTGAGCCTGCTGTTATCGCCGCAACGGGAACTGGAACCATACCGGCTAACTTCAACTCTCTTAATACGTCGTTAAGAAGATCGGCTACAAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTATCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGACACAATTACCAAAAGAAGATCATCAGTACCATCTTCACCAATCCACCACCACCGGAGTAGTCCCCCCCACTACTATTCCGGCAAACTTTTGGATGCTTTCCGACCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCGGCTAATCAAGACGGCTCTTTATTCAGATCAGGACAACCCTCACCCTCCGGTGGCTTACGTTTGTCGAATAATATTCTCGGCGGCCCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACAACGATCATGATGATGATGATGATGATCATAATGGACACTTGAATATCTATGCCACCCAAAATCCACCGCATGGGGCAGCGCCGGACACCGGCGTCTCGTAA 900 49.0 MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITTQLPKEDHQYHLHQSTTTGVVPPTTIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSGQPSPSGGLRLSNNILGGPAPLTLLPGKPLSLGPTAGAARRGNLNNDHDDDDDDHNGHLNIYATQNPPHGAAPDTGVS* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3515792 3517790 - CsaV3_1G005330.1 Csa01g00533 515030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00533 299 Pfam TCP family transcription factor 47 153 IPR017887 -
Csa01g00533 299 MobiDBLite consensus disorder prediction 43 61 - -
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 160 287 IPR005333 GO:0003700
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 155 IPR005333 GO:0003700
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP23 38 155 - -
Csa01g00533 299 PANTHER TRANSCRIPTION FACTOR TCP23 160 287 - -
Csa01g00533 299 MobiDBLite consensus disorder prediction 264 279 - -
Csa01g00533 299 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Csa01g00533 299 MobiDBLite consensus disorder prediction 247 299 - -
Csa01g00533 299 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00533 - - - csv:101218047 575.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00533 Csa01g00228 CCT
Csa01g00228 Csa01g00533 ECH
Csa01g00533 Csa01g00228 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00533 Csa-Chr1:3515792 Csa05g02171 Csa-Chr5:24700297 1.65E-43 dispersed
Csa01g00228 Csa-Chr1:1459334 Csa01g00533 Csa-Chr1:3515792 2.01E-08 wgd
Csa01g00533 Csa-Chr1:3515792 Csa05g02440 Csa-Chr5:26363833 6.09E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30652 PF03634 TCP 8.60E-36 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00533 Csa_Chr01 FPKM 15.211802 17.182999 16.526497 16.682459 15.944407 17.108124 18.874142 21.914042 18.784214 20.550861