Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00536 ATGATTACTGATAAGGGCAAGAAGGCCAAGCTCTCTGAAAAGCCCGAAGACGACAATTCTGAGGTCATCGATGAGAAACTCGTTATGTCGATCGAGAAGTTGCAGGAAATTCAAGACGAGCTCGAGAAGATCAACGAGGAGGCCAGTGATAAAGTATTGGAAGTGGAACAGAAGTACAATGAAGTACGAAAACCTGTCTATGACAAGCGGAATGAGATCATCAAATCAATTCCTGACTTCTGGTTAACAGCGTTCTTGAGCCATCCTGCTCTTTGTGAACTTTTGACCGAAGAGGACCAGAAGATATTCAAACATCTCACCTCCCTGGAAGTGGAAGATTTTAAAGATGTCAAATCGGGTTACTCAATTACTTTTAACTTCAACACCAACCCTTATTTTGAAGATACAAAGCTGACGAAGACCTTCACCTTTCTTGATGAAGGAACAAGGAAAATCAATGCTACATCGATAAAATGGAAAGAAGGAATGGGTTTACCTAATGGGTTTAACCACGAGAAGAAAGGGAACAAACGACCTCAGGCCGAGGAAAGCTTTTTTAGCTGGTTCAGCGATACAGAACAGAAAGATATTGATGACTTCCATGATGAGGTTGCGGAAATTATCAAGGAGGATTTATGGCCTAACCCTTTATCCTACTTCAATAATGAGGCTGATGAAGATGAATTGGATGAAGACGAATCTAATGAAGAGGGAAAAGAAGATGACGACTCAGATGATGATGATGACGATCAAGATGATGACAATGATGCTGGTGATGATGAGGATGATGACTAA 795 41.01 MITDKGKKAKLSEKPEDDNSEVIDEKLVMSIEKLQEIQDELEKINEEASDKVLEVEQKYNEVRKPVYDKRNEIIKSIPDFWLTAFLSHPALCELLTEEDQKIFKHLTSLEVEDFKDVKSGYSITFNFNTNPYFEDTKLTKTFTFLDEGTRKINATSIKWKEGMGLPNGFNHEKKGNKRPQAEESFFSWFSDTEQKDIDDFHDEVAEIIKEDLWPNPLSYFNNEADEDELDEDESNEEGKEDDDSDDDDDDQDDDNDAGDDEDDD* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3523892 3528780 - CsaV3_1G005360.1 Csa01g00536 515033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00536 264 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 252 IPR002164 GO:0005634|GO:0006334
Csa01g00536 264 Coils Coil 27 58 - -
Csa01g00536 264 MobiDBLite consensus disorder prediction 211 264 - -
Csa01g00536 264 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g00536 264 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 252 - -
Csa01g00536 264 Gene3D - 1 77 - -
Csa01g00536 264 SUPERFAMILY NAP-like 8 221 IPR037231 -
Csa01g00536 264 Gene3D Nucleosome assembly protein 78 224 - -
Csa01g00536 264 Pfam Nucleosome assembly protein (NAP) 30 75 IPR002164 GO:0005634|GO:0006334
Csa01g00536 264 Pfam Nucleosome assembly protein (NAP) 75 222 IPR002164 GO:0005634|GO:0006334
Csa01g00536 264 MobiDBLite consensus disorder prediction 223 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00536 K11290 SET, TAF1, I2PP2A; template-activating factor I - csv:101216549 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00042 Csa-Chr2:355084 Csa01g00536 Csa-Chr1:3523892 8.24E-12 transposed
Csa01g00536 Csa-Chr1:3523892 Csa05g02978 Csa-Chr5:30125850 5.31E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g538 . . . Bda15g00573 Bpe12g00550 . . . Cmo13g01178 . . . . . . Cpe20g00027 . . . . . . . . . . . . . . . . . Cone13ag0075 Cone19ag0074 Lsi02g00064 Csa01g00536 Chy12g01551 Cme12g02005 Blo13g00012 . . . . . . Bma08g00217 . . . Cma13g01124 . Car13g00959 . . . . . . . . . . Cla04g01206 Cam04g1272 Cec01g1780 Cco01g1827 Clacu04g1300 Cmu04g1276 Cre01g1567 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001128 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 1 2 9 3 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00536 Csa_Chr01 FPKM 6.961187 8.654374 7.957238 8.145479 9.157514 8.915933 9.018702 9.257306 8.644177 8.318558