Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00538 ATGGAAAGTGAATGCAAAGCCCATCCTCCCAATGTTTTGTCTTCATATCCTACACCAAATGAAGACAAATTTCTACAGAAGAATCCTCCTGTGAAATCTGAACAGCAGCAACTTCCTTATGCTACCAGTTCGAACCAAAAGGCTTTGTGTTCTAAAAACATGAAGAAGACGGCAAGTTCAGAAGAGGAGATTGGAGTTTTCAGAGCTGAAAGGTACTATGGCATGAAACTGGAAGATGAAAGCACAAGAGTTGTTGAGAATTGTGGTAGCAACTATGCAAAGAAGAAAGAACAACGACCTGATGTGCAATATAGGAGACAAAAGAGCAGATCAGGAACTTCAAGTGTGACTTCTGAATCAAGTTGGAATAGCCAAGCTGCTTTATTTCCAAGTTTTTTGAGAAATTCATCTCAAAACATCCAAAACAAGACAAAAGGAAGAAGCCTGTTGGTTAGCCTTACCTGCAACAGGTCTTGTTCTGATAAAAAGTCTATTCTTGTCCATAGGAATTTTCAAGGACAAAAAGGATTGCAAGGGAATGATGTCAAAAAAGAAGCTACCAGGAATGAACAAAATCATATCATCATGGATGGTAGAATGAAGTTTCAAACAGCTACTATGGTGAAACACAAACCAAAAAGTTCAATTTCTGGTGTGACAACAAGAGAAGAGGAGTTGGTATTTCCAATTTCAAACTCTCAATTGCAAAATCTTTCAAAGATTCAGGATGAAGATCCAAGAAAATCCATTGAAGTATTTGGCTCAAACAAGTTGGATAAGAAAGACTTGGTGGCTAAGAATCTAGAGAAGAAATTGTCTGTTCTAAAATGGGATGCCATTCCAAAAGCTAAGGCCACTCAAACTGCTCCAAGAAGCGATCAAATGATTGAAGATATAGGGAGCGATGCAAGTTCCGATCTGTTCGAGATCGAAAACATATCTGGAATCAATGGAAAGCCATTCACAAGAAATACTTCGGATGTTATATCAAGCTCCATGACAGCTTATGAGCCAAGTGAAGCCAGTATTGAATGGAGTGCAGTCACCGCTAGTGCAGCTGATTTCTCATCTGTTGCAGACTATGATGAAAAGAAAGTCACAGCCAGGACTAAAACCACACAACTGGAGAAGGATTTGCATAAAAGTCACCATAGTGGACTGTTAGGCTGTAAAAGTTATAAGGCAGTTAGCATAGCTGAAACTTCATACAGAAATATTGAGAAGTTGAATTCTGATTCTAGACGTTTCCCAAGATTGGACTCGACCATGATCGCTACTAATGCAACAGGCTGA 1293 39.06 MESECKAHPPNVLSSYPTPNEDKFLQKNPPVKSEQQQLPYATSSNQKALCSKNMKKTASSEEEIGVFRAERYYGMKLEDESTRVVENCGSNYAKKKEQRPDVQYRRQKSRSGTSSVTSESSWNSQAALFPSFLRNSSQNIQNKTKGRSLLVSLTCNRSCSDKKSILVHRNFQGQKGLQGNDVKKEATRNEQNHIIMDGRMKFQTATMVKHKPKSSISGVTTREEELVFPISNSQLQNLSKIQDEDPRKSIEVFGSNKLDKKDLVAKNLEKKLSVLKWDAIPKAKATQTAPRSDQMIEDIGSDASSDLFEIENISGINGKPFTRNTSDVISSSMTAYEPSEASIEWSAVTASAADFSSVADYDEKKVTARTKTTQLEKDLHKSHHSGLLGCKSYKAVSIAETSYRNIEKLNSDSRRFPRLDSTMIATNATG* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3532296 3533588 - CsaV3_1G005380.1 Csa01g00538 515035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00538 430 MobiDBLite consensus disorder prediction 29 55 - -
Csa01g00538 430 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 8 424 IPR039615 GO:0009638
Csa01g00538 430 MobiDBLite consensus disorder prediction 91 106 - -
Csa01g00538 430 MobiDBLite consensus disorder prediction 91 120 - -
Csa01g00538 430 MobiDBLite consensus disorder prediction 1 61 - -
Csa01g00538 430 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 3 8 424 IPR039819 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00538 - - - csv:101218524 836.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00538 Csa-Chr1:3532296 Csa02g00857 Csa-Chr2:7892897 7.40E-23 dispersed
Csa03g03644 Csa-Chr3:32487289 Csa01g00538 Csa-Chr1:3532296 1.17E-13 transposed
Csa01g00538 Csa-Chr1:3532296 Csa05g02443 Csa-Chr5:26382594 1.02E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g539 Blo04g00769 . . . . Bpe13g00286 . . Cmo13g01179 . . . . . . Cpe20g00025 . . . . . . . . . . . . . . . . . . . Lsi02g00066 Csa01g00538 Chy12g01550 Cme12g02004 . . . Bda14g00848 . Bpe15g00603 . . . . . . . Car13g00960 . . . . . . . . . . Cla04g01205 Cam04g1271 Cec01g1779 Cco01g1826 Clacu04g1299 Cmu04g1275 Cre01g1565 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008262 1 1 3 0 2 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00538 Csa_Chr01 FPKM 2.688349 3.351066 5.302942 4.803354 7.855299 7.412827 8.300991 4.563424 4.144946 4.632471