Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00539 ATGAATTTTATCGCAATTCAAAACTTTGTTAACAAAACGCTGATATCCCCACGTAGATTGGTTTCCTCTGTCGCGGCTGTGGACAATGTGTCCAATTTTTCCTTCACCAAAATTGGAACTTTCGCTCCTTTCAATCCTGTTCAGTTGCTTAATGATTTTGTTAAATTGGGAAAATTCTCTTTGAGAAACACGAAAGTTCTACACGCTAAGTTGCTCCGAGAAACTCTTCGTTTCGATATCTATGTTTCAAATTCTTTGCTACATTTGTACTCCAAGTCTAACGCTATGGACCATGCAATCAAACTTTTTGATACAATCCTATACCCAAATGTTATTTCTTGGAATACCATTATCACGGGTTTGAACAACAATTTCTTACATTTGGACTCGTTGAGAACATTTTGCTGGATGCATTTCCTGGGTTTTAAACCTAATGAGGTAACATGTGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCTCAATGTTTGGCAAGCAGGTTTATTCACTTGCTGTGAGAAATGGGTTCTTCGATAACGGTTATGTTCGAACCGTAATGATTGATTTATTTGCAAAAGATTCTAAATTTTTGGATGCTCTAAGGGTGTTTCATGATGTTGATTGTGCGAATGTGGTGTGTTGGAATGCTATTGTCTCTGCAGCGGTAACAAATGGGGAGAATCTGATGGCTTTGGATCTTTTCAACAGAATGTGTAGTAAATTTCTGGAGCCTAATAGTTTCACCTTTTCTAGTGTTCTAACTGCGTGTTCTGCACTTCAAGATCTTGAATTTGGGAAAAAGGTTCAAGGGAGAGTGATTAAATGTGGTGGAGGAGACGTTTTTGTTGAGACAGCCCTTGTTAGTTTGTACGCTAAGTGTGGAGACATGGATGAGGCTGTTAAGACATTCTTGCAGATGCCCATTCGCAATGTAGTCTCGTGGACAGTTATAATGTCTGGCTTTGTGCAAAGTAATGATTATTTAATGGTCATCAAGTTTTTTGAAGATTTGAGAAAAGTAGGAGAGGAAATTAATAGCTACACAGTTACTACCCTGTTAAGGGCATGTGCTAATCCAGCCATGAGAAAAGAGGCAACCCAACTTCACTCCTGGATTCTAAAAGCTGGTTTTTCTTCACATTCAGAGGTGGCGGCTGCTTTAATTATTATGTATTCAAAAATAGGAGCAGTTGATCTTTCATTGATGATTTTTAGAGAGATGGATAACCATAGGAATCTCAGTTCTTGGACAGCCATGATATTGTCGTTTGCAAAAAATAATGATAAAGAGGAAGCAAGTGATTTGTTCCGAAAAATGTTAAGGGAAAGAATGGGACCAGATTCAGTATGTACTTCCGCCCTCTTGAGTTTGACTGACTGTATTACTTTTGGGAGGCAGATACACTGCTACGCACTTAAAACTGAATTAATATTTAATGTTCATGTTGGGAGTTCTCTTCTTACAATGTATTCTAAATGTGGCCATCTAAAGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCCTGGACCTTAATGATTTCCTGCTTCTCAGAACATGGCTATGCAAAAGATGCCATTCAATTATTTAGAGAAATGTTGTTAGAATGTGTACCTGATGGTACGTCTTTGAGTGCAGTCCTAACTGCATGCTACGCCCTTCCTTCTATTCAATTAGGTAGAGAAATTCATGGTTACTCAGTTCGTGTGGGACTTAATGAAAACGTAGCTTTGGGAAGTTCGCTTGTGACTATGTACTCAAAATGTGGTAACCTGGCATTGGCTAGGAGGGTATTTGAAACATTGCCCCAGAAAGATGATATTGTGTGTTCTTCATTGGTTTCAGGATATGCTCAACAAAAGTGCATCAAAGAAGCTCTTTTGCTATTTCGCAGTCTACTAAACATCATAGGTCAGGAAGTTGGTAAAAGTGTGATAAATGAGTATTTGCGGCTGCGAGGTCATTCTGACCTCTGCAGCAAAACGTTGGATGTTCCAACTTCAACCTTACATACCTATGTCAAACCACCCTCCCATGAAGTTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTACCTCTAGTAACGTGGAAAGCCAGGTTTCATCAGATACTCGCAATTCATCATCTGGCAAAGGGAATCAAAGTTCTTCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTCTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGATTAGTGAGCAATTGTCTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGCCCATGCAGTTTTTGTGGATCCCTTGTGCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCAAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCTGTAATCGATGATCAAAGTGATTATTACCAGATTGAGGGCAATAGCTGGTTGTCTAATGAGGAAAAGGAGCTTTTGAAAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATTCTTCTGAACTTGAATCACACACCAATATCATGCGGCCAGCAGATGAAAGAGAAGTGAATAGAATTAAACCAAATCCATCTCTTCAAATACATCCTGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTTGGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATCTTATGATGGAAAGTGTTTGA 2964 39.61 MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFSLRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLLECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVGKKGICLEITGRVQHDSNELKHLMMESV* 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3534654 3539494 - CsaV3_1G005390.1 Csa01g00539 515036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00539 987 MobiDBLite consensus disorder prediction 934 958 - -
Csa01g00539 987 MobiDBLite consensus disorder prediction 681 745 - -
Csa01g00539 987 Gene3D Tetratricopeptide repeat domain 26 164 IPR011990 GO:0005515
Csa01g00539 987 Gene3D Tetratricopeptide repeat domain 279 363 IPR011990 GO:0005515
Csa01g00539 987 Gene3D Tetratricopeptide repeat domain 564 654 IPR011990 GO:0005515
Csa01g00539 987 Gene3D Tetratricopeptide repeat domain 468 563 IPR011990 GO:0005515
Csa01g00539 987 Coils Coil 820 840 - -
Csa01g00539 987 Pfam PPR repeat family 310 359 IPR002885 -
Csa01g00539 987 Pfam PPR repeat family 211 257 IPR002885 -
Csa01g00539 987 TIGRFAM PPR: pentatricopeptide repeat domain 416 448 IPR002885 -
Csa01g00539 987 TIGRFAM PPR: pentatricopeptide repeat domain 513 539 IPR002885 -
Csa01g00539 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Csa01g00539 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Csa01g00539 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Csa01g00539 987 Pfam Putative zinc finger motif, C2HC5-type 765 805 IPR009349 GO:0005634|GO:0006355|GO:0008270
Csa01g00539 987 MobiDBLite consensus disorder prediction 944 958 - -
Csa01g00539 987 Pfam PPR repeat 416 443 IPR002885 -
Csa01g00539 987 Pfam PPR repeat 513 539 IPR002885 -
Csa01g00539 987 Pfam PPR repeat 485 510 IPR002885 -
Csa01g00539 987 Pfam PPR repeat 84 104 IPR002885 -
Csa01g00539 987 Pfam PPR repeat 614 638 IPR002885 -
Csa01g00539 987 Gene3D Tetratricopeptide repeat domain 165 278 IPR011990 GO:0005515
Csa01g00539 987 Gene3D Tetratricopeptide repeat domain 364 460 IPR011990 GO:0005515
Csa01g00539 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Csa01g00539 987 MobiDBLite consensus disorder prediction 697 745 - -
Csa01g00539 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 510 IPR002885 -
Csa01g00539 987 Coils Coil 864 891 - -
Csa01g00539 987 PANTHER - 61 538 - -
Csa01g00539 987 PANTHER - 204 638 - -
Csa01g00539 987 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 61 538 - -
Csa01g00539 987 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 204 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00539 - - K23398 bhj:120082449 1017.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00539 Csa-Chr1:3534654 Csa01g02662 Csa-Chr1:23649005 8.08E-35 dispersed
Csa01g00539 Csa-Chr1:3534654 Csa03g01691 Csa-Chr3:12669403 2.76E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00539 Csa_Chr01 FPKM 1.816931 1.425559 22.01412 22.440718 1.223701 0.947944 1.464496 0.0 0.0 0.0