Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00544 ATGACAGAGGAAAACAAAGTGGTGCTTTATGGATTGTGGGCGAGTCCTTTTGTAAAGAGGGTCGAACTCGCCCTTAAAATCAAAGCCATCCCTTTTGAATATGTAGAAGAAGATTTCCTGAACAAAAGCCCAGAGCTTCTCAAATTCAATCCTGTTTACAAGAAGGTTCCTGTACTCGTCCACAATGGAAGACCCATTTGCGAATCAGCTATAATTTTTGAGTACATAGAGGAAGTTTGGAACAACAACGGCCCTCCTCTTCTACCTCAAGATCCCTACAAAAGATCCCAGATTCGATTCTGGGCTGATTTCGTTCAGAATCAGTTGTTTGATGGTCTACTTTTAGCAATGAAGACAGAAGGGGAAGCACAAGAGAAAGCCATAAAAGAAGTGAAAGAGAAGCTGAAAGTTATCGAAGAACAGGGCTTGAAGAGTTTGTTGGCAGAGGGAAGTCCATTTGTAAATGGAGATGAACTTGGATATTTAGACATAGGGATGTTGACAGTTCTTGGAAGGTACAAGATTTATGAAGAGTTTTTTGGAATGAAAATTATGGAAGAAGAGGAGATCCCAATTGTATTCTCGTGGTTGAATAGATTGATTGAGCACCCTATTGCAAAGGAGGGAGCTCCTCCCAAGGAAAAAGTTTTGGGGCTTCTTCACATCGTTAGGCGAAGATTTCTACCATCCCCTGTTACTGCTTAA 705 41.13 MTEENKVVLYGLWASPFVKRVELALKIKAIPFEYVEEDFLNKSPELLKFNPVYKKVPVLVHNGRPICESAIIFEYIEEVWNNNGPPLLPQDPYKRSQIRFWADFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVIEEQGLKSLLAEGSPFVNGDELGYLDIGMLTVLGRYKIYEEFFGMKIMEEEEIPIVFSWLNRLIEHPIAKEGAPPKEKVLGLLHIVRRRFLPSPVTA* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3551371 3552181 + CsaV3_1G005440.1 Csa01g00544 515041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00544 234 PANTHER GLUTATHIONE S-TRANSFERASE 1 229 - -
Csa01g00544 234 SUPERFAMILY Thioredoxin-like 5 109 IPR036249 -
Csa01g00544 234 Pfam Glutathione S-transferase, N-terminal domain 7 77 IPR004045 -
Csa01g00544 234 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Csa01g00544 234 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 219 IPR010987 -
Csa01g00544 234 SUPERFAMILY GST C-terminal domain-like 78 225 IPR036282 -
Csa01g00544 234 CDD GST_C_Tau 92 220 IPR045074 GO:0004364|GO:0006749
Csa01g00544 234 SFLD Main.3: Omega- and Tau-like 3 227 IPR045073 -
Csa01g00544 234 Pfam Glutathione S-transferase, C-terminal domain 115 204 IPR004046 -
Csa01g00544 234 Gene3D Glutaredoxin 1 87 - -
Csa01g00544 234 CDD GST_N_Tau 7 80 - -
Csa01g00544 234 Gene3D - 88 229 - -
Csa01g00544 234 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Csa01g00544 234 SFLD Main (cytGST) 3 227 - -
Csa01g00544 234 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 229 IPR045073 -
Csa01g00544 234 Coils Coil 121 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00544 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101203519 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00542 Csa-Chr1:3547658 Csa01g00544 Csa-Chr1:3551371 8.14E-153 dispersed
Csa01g00544 Csa-Chr1:3551371 Csa04g01568 Csa-Chr4:15155505 1.65E-55 dispersed
Csa05g02446 Csa-Chr5:26399471 Csa01g00544 Csa-Chr1:3551371 1.16E-10 dispersed
Csa01g00543 Csa-Chr1:3550675 Csa01g00544 Csa-Chr1:3551371 3.90E-07 tandem
Csa01g00544 Csa-Chr1:3551371 Csa01g00545 Csa-Chr1:3552639 5.16E-32 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00544 Csa_Chr01 FPKM 27.13896 31.82687 33.420338 35.791 16.232283 16.501732 19.71384 24.138977 26.149536 27.702955