Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00552 ATGGGTGATCACATGGTTTTGTGCGTGGACCGCCTCATTACGCCTGAAAGTTTACAGTCGCTGCAGGGAACTACTGCTCCAGGATCTTCTTTAGAATCTTCATCTTCTCAAAATTCGGAGCCACCTGTTTGTGCTATTGCTGTAGAAGATGTGGATGAACATGATGGATCTGAAGAAGACCCCCTTATTCAGACAGTTGAATGTCGAATATGTCAGGAAGAGGACAGCATTAAGAATTTGGAGGTTCCTTGTGCTTGCAGTGGCAGCTTGAAGTATGCTCACAGGAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAACTTGTGAAATCTGTCATCAGAATTATCAGCCTGGTTATACCTTGCCTGTACCACCCCCTCGATCGGAAGATGCCACCATTGATGTGAGTGAAGGTTGGGCAGTCTCTGAAACTGCTTTAGATTTGAATGATCCACGACTTTTGGCTATGGCAGCTGCAGAACGTCACTTTCTTGAGGCAGAATACGATGAATATGCAGATGCTAGTGCGAATGGAACGGCATTTTGCCGATCTGCTGCTCTGATTTTGTTGGCTCTTTTGCTGTTGAGGCACGCTCTGTACCTTACAAATGGTGATGGAGAAGATGATGCTTACACTTTCTTCTCGCTTTTATTGCTGCGAGCTGCTGGGTTTCTTCTTCCCTGCTACATAATGGCGTGGGCCATCAGCATACTACAGCGTCGAAGACAAAGACAGGAAGCCGCAGCACTTGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCGCAAGGCCAAAGCCTTCAGTTTACCATTGCTCCTGGGCCTGTGGTTACTCCCCATCAAGAGCCACTCCAATAA 864 47.11 MGDHMVLCVDRLITPESLQSLQGTTAPGSSLESSSSQNSEPPVCAIAVEDVDEHDGSEEDPLIQTVECRICQEEDSIKNLEVPCACSGSLKYAHRKCVQRWCNEKGDITCEICHQNYQPGYTLPVPPPRSEDATIDVSEGWAVSETALDLNDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQGQSLQFTIAPGPVVTPHQEPLQ* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3591143 3595300 - CsaV3_1G005520.1 Csa01g00552 515049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00552 287 CDD RING_CH-C4HC3_MARCH 68 114 - -
Csa01g00552 287 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Csa01g00552 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 119 IPR013083 -
Csa01g00552 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 274 - -
Csa01g00552 287 MobiDBLite consensus disorder prediction 19 40 - -
Csa01g00552 287 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Csa01g00552 287 Pfam Protein of unknown function (DUF3675) 119 237 IPR022143 -
Csa01g00552 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 274 IPR033275 -
Csa01g00552 287 SUPERFAMILY RING/U-box 65 118 - -
Csa01g00552 287 SMART ringv_2 67 114 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00552 - - - csv:101217964 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00552 Csa-Chr1:3591143 Csa02g00848 Csa-Chr2:7806720 4.78E-103 dispersed
Csa04g00119 Csa-Chr4:687147 Csa01g00552 Csa-Chr1:3591143 3.09E-27 transposed
Csa07g00748 Csa-Chr7:5267076 Csa01g00552 Csa-Chr1:3591143 6.67E-08 transposed
Csa01g00552 Csa-Chr1:3591143 Csa05g02449 Csa-Chr5:26408726 2.42E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00552 Csa_Chr01 FPKM 31.491171 33.758492 6.075299 6.048806 12.826414 10.757798 11.724382 7.891005 8.766632 8.566765