Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00558 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCCGAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTGAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAGACGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGGAATTGACCAATGAAGCTTCCTTATTGCGAGATCAGATTGGTGAAACACATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATGTAGACCAGCTCCAGCAGATGGAAGATCTATTAAGGGAGTCCTTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACAGGCCAGTATTCGTGTGCTGGGATGTCCTTACCTTTGTTAATGGAAGAAATGCAAGGCACTCAACCCTTGTTATGGCTTGCCAACTATGGCACTCAACAGATTCCTTTACCAAATGAGCCCAGCTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCTAGTTTTTTCAACCCTGGGAAGCAAATTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCTCAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACGCTGCAACTTAGTGATCAATATCCATACCCTACATGTGATGGTTCAAACTTCCAAGATGAAAAGAGACTGAAAATGGAAATGGAGATGAACTTGCATGCAGCTTGTGTGGATACTCAACTAAATGACAGGTTGGAGCTCTCTAGATCACTATATGATGATAACCAGCACCCTTGGGCTTCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGAATATCACCATCAGCCAAATTGA 1068 42.32 MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNIDDFVGSSSQDFEELTNEASLLRDQIGETHKRLSYWRNPDSINNVDQLQQMEDLLRESLNQTRLHKENLRRHQLLSQDFTGQYSCAGMSLPLLMEEMQGTQPLLWLANYGTQQIPLPNEPSFLQPGDVECSFPSYPSFFNPGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLSDQYPYPTCDGSNFQDEKRLKMEMEMNLHAACVDTQLNDRLELSRSLYDDNQHPWASIPGPCSIPMYQSNEYHHQPN* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3621937 3626203 + CsaV3_1G005580.1 Csa01g00558 515055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00558 355 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 354 - -
Csa01g00558 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa01g00558 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa01g00558 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa01g00558 355 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa01g00558 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 354 - -
Csa01g00558 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Csa01g00558 355 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Csa01g00558 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa01g00558 355 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00558 Csa-Chr1:3621937 Csa04g02049 Csa-Chr4:20750323 9.27E-27 dispersed
Csa01g00558 Csa-Chr1:3621937 Csa05g02467 Csa-Chr5:26463781 2.18E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30656 PF00319 SRF-TF 1.20E-19 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00558 - - csv:101220182 717.227