Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00560 ATGGCAACTGTCATTACTCAGGCTTCTGCCACTGTCTTCCGGCCATGTGCTTCAAGATCGAGGTTTCTCTCGGGGTCCTCGGGAAAGTTTAACAGAGCCTTGTCTGTTAAGCCAACAACTTCTTCAATTCCTAATGCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCGGGTTTGCCATCACCAACTTATCTTGATGGAAGCCTTCCAGGTGACAACGGATTTGATCCTCTAGGACTTGCAGAGGATCCCGAAAACTTGAGGTGGTATACGCAAGCCGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTGACAAATTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTGCCACCAAATGATGTTGGGTACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAGAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACTGGAAAAGGTCCATTTGACAACTTCATGCAGCACATTTCAGACCCATGGCACAACACAATAGTTCAAACACTAAGGTGA 753 44.62 MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTLR* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3626647 3627932 - CsaV3_1G005600.1 Csa01g00560 515057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00560 250 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Csa01g00560 250 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Csa01g00560 250 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 249 IPR001344 GO:0009765|GO:0016020
Csa01g00560 250 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 249 - -
Csa01g00560 250 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00560 K08910 LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4 - csv:101218675 518.464
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00560 Csa01g00241 CCT
Csa01g00241 Csa01g00560 ECH
Csa01g00560 Csa01g00241 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00560 Csa-Chr1:3626647 Csa04g02748 Csa-Chr4:26342869 3.84E-33 dispersed
Csa01g03007 Csa-Chr1:26223514 Csa01g00560 Csa-Chr1:3626647 4.95E-65 transposed
Csa01g03255 Csa-Chr1:28713310 Csa01g00560 Csa-Chr1:3626647 3.79E-48 transposed
Csa02g01960 Csa-Chr2:18395695 Csa01g00560 Csa-Chr1:3626647 7.47E-67 transposed
Csa05g01755 Csa-Chr5:20901153 Csa01g00560 Csa-Chr1:3626647 4.27E-39 transposed
Csa05g02208 Csa-Chr5:24869407 Csa01g00560 Csa-Chr1:3626647 4.64E-77 transposed
Csa01g00241 Csa-Chr1:1525225 Csa01g00560 Csa-Chr1:3626647 5.89E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g566 Blo04g00773 . Bda06g00542 Bda15g00608 Bpe12g00541 . . Bma12g00994 . . . Cma11g00139 Car10g00187 Car11g00156 . . Cpe04g01495 . . . . . . . Cla06g01586 Cam06g1755 Cec06g1811 Cco06g1814 Clacu06g1721 Cmu06g1664 Cre06g2478 Cone2ag0840 Cone16ag0175 . . Lsi02g00081 Csa01g00560 Chy12g01533 Cme12g01983 Blo13g00003 Blo15g00312 . . Bpe07g00779 . . Bma08g00227 Sed08g2078 Cmo10g00213 Cmo11g00172 . . . . . Cpe18g00788 Bhi08g01147 Tan05g2431 Cmetu02g0368 Lac10g0087 Hepe07g2501 . . Cla04g01190 Cam04g1247 Cec01g1758 Cco01g1804 Clacu04g1276 Cmu04g1254 Cre01g1547 . Csa01g00241 Chy02g02491 Cme02g01877
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001994 2 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00560 Csa_Chr01 FPKM 72.290939 76.189934 116.474419 108.934616 64.982277 57.371529 67.505539 168.360443 180.046799 182.943695