Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00561 ATGGGATCAGTTAACGTTGGAATATTGGTGATAGGGATCTTTTGTTTGCTGTCTTTGGTTCATGGAAGAAATGGAGGTGGACGATGGATAACTGACGCCCATGCTACTTTCTATGGCGGCCCCGACGCTTCTGGTACTTCAGGTGGAGCATGTGGATATGGAAGTGGGTTTGATTATGGGACTATAACGACGGCATTGAGTCCAGCGTTGTACGACAATGGGCTAAGCTGCGGTGCTTGTTTCGAGGTTAAATGTATAAATAACCCACAATGGTGCCTTCCCGGCTCCGTCGTTGTCACCGCCACCAACTACTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCCCAACCTGCCTTCCAAACCATTGCTAATTTCATTGGTGGGGTCGTTCCTGTTGCTTATCGCAGGGTTAACTGCGGAAGGAGAGGAGGAATAAAGTTTCAAATAAGTGGGAATCCATATTTCAATTTGGTACTGATAAGCAATGTGGGAGGTGCTGGAGATGTTCGTGCTGTTTATATCAAAGGGGGTAAGGGTAGGCCTAATTCTTGGAAGGCAATGACTAGAAATTGGGGTCAAAATTGGCAAAGCGATGACTACCTTGTTGGAAAACCCTTGTCTTTTAAGGTCATTACTGGTGATGGTCGCTCACTTGTGTCTTCCAATGTTGCCCCTCACGATTGGTCATTTGGACAAACCTATATTGGCAGACAGTTCTCTTGA 741 47.23 MGSVNVGILVIGIFCLLSLVHGRNGGGRWITDAHATFYGGPDASGTSGGACGYGSGFDYGTITTALSPALYDNGLSCGACFEVKCINNPQWCLPGSVVVTATNYCPPGGWCAPSLHHFDLSQPAFQTIANFIGGVVPVAYRRVNCGRRGGIKFQISGNPYFNLVLISNVGGAGDVRAVYIKGGKGRPNSWKAMTRNWGQNWQSDDYLVGKPLSFKVITGDGRSLVSSNVAPHDWSFGQTYIGRQFS* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3628264 3629601 - CsaV3_1G005610.1 Csa01g00561 515058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00561 246 SUPERFAMILY Barwin-like endoglucanases 29 168 IPR036908 -
Csa01g00561 246 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Csa01g00561 246 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Csa01g00561 246 Pfam Lytic transglycolase 63 140 IPR009009 -
Csa01g00561 246 SMART dpbb_1 63 140 IPR007112 -
Csa01g00561 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 150 IPR007112 -
Csa01g00561 246 SUPERFAMILY PHL pollen allergen 147 241 IPR036749 -
Csa01g00561 246 Gene3D - 146 245 IPR036749 -
Csa01g00561 246 Pfam Expansin C-terminal domain 151 231 IPR007117 -
Csa01g00561 246 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Csa01g00561 246 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Csa01g00561 246 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Csa01g00561 246 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Csa01g00561 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Csa01g00561 246 PANTHER EXPANSIN-A15 10 246 IPR002963 GO:0009664
Csa01g00561 246 PANTHER EXPANSIN 10 246 - -
Csa01g00561 246 Gene3D - 21 145 IPR036908 -
Csa01g00561 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 242 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00561 Csa-Chr1:3628264 Csa02g00844 Csa-Chr2:7719916 1.78E-98 dispersed
Csa04g00216 Csa-Chr4:1284650 Csa01g00561 Csa-Chr1:3628264 3.46E-08 dispersed
Csa01g00242 Csa-Chr1:1529037 Csa01g00561 Csa-Chr1:3628264 1.25E-97 wgd
Csa01g00561 Csa-Chr1:3628264 Csa05g02468 Csa-Chr5:26468526 6.66E-105 wgd
Csa01g00561 Csa-Chr1:3628264 Csa05g02995 Csa-Chr5:30259871 1.14E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00561 - K20628 csv:101218913 515.383