Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00565 ATGAACCGGACATTCAATTCATACCCAGATGAAAACTATGCGAATGTTAGGAGATCCATGAGGCAGACTGAGGATGATCATCACAAGAACCTATCGGACAAGGATCCGCACTTTGATTTCAAGAGCAACCATGAATTGAAATTTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTCTGATGATGTTCATTTCTGTGATATTTTCGGTCTCGGTGGTTTTTAGAGATCCACCGTCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAGTTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCAAACAGTTGTACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGTGGTTGGTTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTGCTTACTTACTCTCCACATTGCGGGGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTTAGGTCTAATGGTAGTAGCAGCCCCTCAGACTGTAAATATCTTCTGTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTTGCTTCAGCGTTTCTTTATGCTCTCCTCACAAATCGCGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGGTCTTCTCTGTGAACCATTTCCTGAGGTTTCTTGGTTTCTTCCCCAAGATTTCCCATTAAAAGATGACTTCAGTAGTTTCAACCAGAACTCTCCTAATTGCTATGGGAAAATAATGAAGAATAGCATAACGCCAGATTCAAGTGGAATGATCTTGCCATCTGTTGTTTATCTTCATTTGGTCCATGATTACGACGATGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAATTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTCGAGAAAGAACTGAATGATCTTTTCCCAAATAAAGATACGGTTTTCCACTTCTTGGGTCGATATCTGTTCCACCCCACAAATTCGGTTTGGGGACTGATTACGAGATATTATCACGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGAACTGGACCTTTTCAACACATTCTGGACCAGGTTCTGGACTGCACCATGAAAGAGAATCTGTTGCCACAAACCGAGAGGCAAACGTATGCCATTGATCCAGTTAGTAATCAAAAGTCAAAAGCCGTGCTGATAACTTCATTGAGCGCTGGTTACTTTGAGAAGTTAAGAGATATTTACTGGGAGAATCCAACAGTAACGGGGGAGATAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACTGAAAAAAGTATACATAACCAAAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTAGTCACCAGTTCATGGTCGACCTTTGGATACGTGGCTCAAGGTCTTGGTGGTCTGAAGCCATGGATATTGTACAAACCCGAAAATCGTACTGCACCGGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCTTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAGCTTGTTCCTCATGTGAGGCACTGTGAGGACATGAGCTGGGGACTTAAGTTGGTTGATGATCCATATGATTGA 1761 42.48 MNRTFNSYPDENYANVRRSMRQTEDDHHKNLSDKDPHFDFKSNHELKFGFSSIRVMGMFVVLMMFISVIFSVSVVFRDPPSDAVIEGSDVWIPQWSSDPVDSKVGDLQTVVQPVDKLLSGLLSAKHVVGSCLSRYNSVAYQHKLAYEPSAYLLSTLRGYEDLHKRCGVHTESYNKTLEQLRSNGSSSPSDCKYLLWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMAGLLCEPFPEVSWFLPQDFPLKDDFSSFNQNSPNCYGKIMKNSITPDSSGMILPSVVYLHLVHDYDDDDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPTNSVWGLITRYYHAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTMKENLLPQTERQTYAIDPVSNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGEIISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMSWGLKLVDDPYD* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3648040 3651515 - CsaV3_1G005650.1 Csa01g00565 515062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00565 586 Gene3D - 369 532 - -
Csa01g00565 586 Pfam Xyloglucan fucosyltransferase 104 554 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa01g00565 586 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 31 582 - -
Csa01g00565 586 PANTHER FUCOSYLTRANSFERASE 2-RELATED 31 582 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa01g00565 586 Gene3D - 188 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00565 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101219153 1174.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00565 Csa-Chr1:3648040 Csa04g00754 Csa-Chr4:5166215 2.63E-178 dispersed
Csa01g00565 Csa-Chr1:3648040 Csa05g02478 Csa-Chr5:26514398 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02478 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 2.0e-154 542.7
Csa01g00565 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.3e-150 529.3
Csa05g02478 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.1e-163 571.2
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 6.9e-160 560.8
Csa05g02478 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.5e-137 486.5
Csa01g00565 . 101 582 Xyloglucan Fucosyltransferase1 AT1G14110 50.7 6.2e-131 464.5
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.4 1.3e-190 662.9
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 3.7e-182 634.8
Csa06g00471 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 70.1 1.1e-168 589.7
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 7.4e-200 693.7
Csa01g00565 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.2 4.9e-188 654.4
Csa04g00754 . 48 543 Xyloglucan Fucosyltransferase1 AT2G03220 51.2 1.7e-148 523.1
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 2.1e-153 539.3
Csa01g00565 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 1.3e-145 513.5
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 4.0e-147 518.5
Csa01g00565 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.3 7.4e-141 497.7
Csa05g02478 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 5.7e-149 524.6
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 5.5e-144 508.1
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.5e-188 656.0
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 2.3e-184 642.1
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 7.4e-200 693.7
Csa01g00565 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.2 4.9e-188 654.4
Csa04g00754 . 48 543 Xyloglucan Fucosyltransferase1 AT2G03220 51.2 1.7e-148 523.1
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 5.7e-149 524.6
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 5.5e-144 508.1
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 4.0e-147 518.5
Csa01g00565 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.3 7.4e-141 497.7
Csa05g02478 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 2.0e-154 542.7
Csa01g00565 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.3e-150 529.3
Csa05g02478 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.1e-163 571.2
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 6.9e-160 560.8
Csa05g02478 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.5e-137 486.5
Csa01g00565 . 101 582 Xyloglucan Fucosyltransferase1 AT1G14110 50.7 6.2e-131 464.5
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 2.1e-153 539.3
Csa01g00565 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 1.3e-145 513.5
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.5e-188 656.0
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 2.3e-184 642.1
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.4 1.3e-190 662.9
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 3.7e-182 634.8
Csa06g00471 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 70.1 1.1e-168 589.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00565 Csa_Chr01 FPKM 0.776596 0.0 1.691185 2.212302 2.71634 3.092657 4.078548 1.620276 2.018 1.444458