Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00568 ATGGAAATGGGTCACCTTTCATTTGGTTCATTGGTGAAGATCTGCAGGAAGGGAATCGCGTTTTGTGTAGGTTCTGGTTTACCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGTGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAGGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATCTCCGTGAGTTCAGCTAGGCAGGTCATCGATGCTTTGAATGCAGAGGGACCTGAAATTGATATTATACTGTCGGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACTCGAGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCACGCTTGGACTGGCGGAAAAAAATATTTTGAATTATGAGTTTGATTTGGTGGCATCAGATCCAAGTGATGCTAATACCAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACCAATCCGGAAATGGGAATTACCGCGCCTGCAACACATCAAGAAGATGAGCCTGGTATTGCCGCCACAATTGTAGAGCCTCCTGCTGTTCATTCAGTGCAACATCAGCCAGATGTACCTGGAATTAGTGAGCGCCGAACAGGGCAACCTTCTTCATGTCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTGAAAAATAAGGCAGTAGATATTGAAGACAGTACTAAACGACTTTTGCTGGAAGAAAATCATCAAGAAACTAGTCAGCGTGCGGTTCGTCTTCCCCCAATACAAGAAATTGGGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAACACCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCAGTGGAGAGATCTTGTACACCACCTGCTGGCACAGACGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGTTCTCAAGTCCTTCTGCACTCTCGAAATGGATCTCAACTTGATATTTCAGGCCTTCCTGTGCAAACGCAAACTGCTGCTTATCCTTTTTATATGCCAGAAGGTATGATGTCGGCGCAAATTTACCAAAACAACCTGCATGAAATGCAAAATCATGCGGCAATGATGTCACAGTATGGTCATTTTCACCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCTATGAACATATGTTTACAACCCGGTCAAATGCCAACTACCACTAATACTCATTCATGGCCATCTCTTGGGAATTCATCTTCCAATGAAGCAAAGTCTAACAAATTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGGAAGGAGCGCTGTTTTGACAAAAAGATTAGGTATGTTAATAGGAAACGGCTTGCTGAGAGAAGGCCGCGTGTGCGTGGCCAGTTTGTAAGAAAGGTAAATGGTGTCAACGTAGATCTTAACGGACAGCCTGCATCTGCTGATGATGTTGAGGATGAAGACGAGGAGGAGGAGCTACTATCAAGGGATTCTTCTCATGAGGATGACGGTTCAGGATATTAG 1761 43.55 MEMGHLSFGSLVKICRKGIAFCVGSGLPVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRTLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGITAPATHQEDEPGIAATIVEPPAVHSVQHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDIEDSTKRLLLEENHQETSQRAVRLPPIQEIGEALESHSQGDEHPSSTSFPDSFSVERSCTPPAGTDVHRERNINEENCSQVLLHSRNGSQLDISGLPVQTQTAAYPFYMPEGMMSAQIYQNNLHEMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTTTNTHSWPSLGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEELLSRDSSHEDDGSGY* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3658056 3662728 + CsaV3_1G005680.1 Csa01g00568 515065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00568 586 MobiDBLite consensus disorder prediction 559 575 - -
Csa01g00568 586 SMART REC_2 61 176 IPR001789 GO:0000160
Csa01g00568 586 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 33 562 - -
Csa01g00568 586 Pfam Response regulator receiver domain 63 174 IPR001789 GO:0000160
Csa01g00568 586 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 562 IPR045279 GO:0009736
Csa01g00568 586 MobiDBLite consensus disorder prediction 209 242 - -
Csa01g00568 586 ProSiteProfiles CCT domain profile. 503 545 IPR010402 GO:0005515
Csa01g00568 586 ProSiteProfiles Response regulatory domain profile. 62 180 IPR001789 GO:0000160
Csa01g00568 586 SUPERFAMILY CheY-like 59 186 IPR011006 -
Csa01g00568 586 Gene3D - 61 264 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 343 381 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 478 495 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 550 586 - -
Csa01g00568 586 Pfam CCT motif 503 545 IPR010402 GO:0005515
Csa01g00568 586 MobiDBLite consensus disorder prediction 478 498 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 349 368 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 258 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00568 K12127 TOC1, APRR1; pseudo-response regulator 1 - csv:101220107 1075.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00568 Csa-Chr1:3658056 Csa05g00009 Csa-Chr5:54545 1.18E-14 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa01g00568 Csa-Chr1:3658056 3.56E-11 dispersed
Csa07g02285 Csa-Chr7:21265420 Csa01g00568 Csa-Chr1:3658056 1.18E-08 dispersed
Csa01g00568 Csa-Chr1:3658056 Csa03g01497 Csa-Chr3:11108956 7.37E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g582 . . . . . . . . Cmo13g01203 . . . . . . Cpe20g00010 . . . . . . . . . . . . . . . Cone2ag0830 . . . . Csa01g00568 . . . . . . . . . . . . . . . Car13g00976 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02646 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Csa02g01797 . 52 256 Response Regulator Gene Family AT3G16857 54.2 9.4e-55 211.8
Csa02g00244 . 59 316 Response Regulator Gene Family AT3G16857 51.8 1.3e-51 201.4
Csa04g02646 . 1 412 Response Regulator Gene Family AT4G31920 51.2 7.5e-88 321.6
Csa02g00244 . 13 340 Response Regulator Gene Family AT4G31920 54.8 1.4e-78 290.8
Csa06g01765 CCT,ECH 31 284 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Csa03g01497 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.1 6.0e-69 258.8
Csa02g01797 . 11 259 Response Regulator Gene Family AT4G31920 50.8 2.4e-62 236.9
Csa03g01497 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 1.8e-39 160.6
Csa01g01861 . 16 390 Response Regulator Gene Family AT2G25180 56.2 5.2e-103 372.1
Csa02g00244 . 17 412 Response Regulator Gene Family AT2G25180 50.1 3.2e-84 309.7
Csa03g01497 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 54.7 1.7e-77 287.3
Csa02g01797 . 11 256 Response Regulator Gene Family AT2G25180 56.0 4.9e-69 259.2
Csa06g01765 CCT,ECH 92 325 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Csa01g01861 . 79 303 Response Regulator Gene Family AT2G01760 53.1 1.8e-49 193.4
Csa02g01797 . 72 259 Response Regulator Gene Family AT2G01760 51.5 1.5e-48 190.3
Csa02g01797 . 9 258 Response Regulator Gene Family AT5G58080 51.0 3.7e-62 236.5
Csa06g01765 CCT,ECH 29 255 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Csa03g01497 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 2.2e-78 290.4
Csa04g02646 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Csa02g01797 . 10 235 Response Regulator Gene Family AT4G16110 54.9 5.2e-59 226.1
Csa01g01861 . 17 249 Response Regulator Gene Family AT4G16110 53.4 6.3e-57 219.2
Csa02g00244 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.7e-52 203.8
Csa01g00186 . 30 186 Response Regulator Gene Family AT3G48100 69.0 1.1e-51 199.9
Csa05g02375 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Csa05g01629 . 11 150 Response Regulator Gene Family AT3G48100 60.0 2.0e-40 162.5
Csa03g03727 CCT 3 161 Response Regulator Gene Family AT3G48100 53.5 5.7e-40 161.0
Csa05g02855 . 103 262 Response Regulator Gene Family AT3G48100 55.9 1.7e-39 159.5
Csa04g01951 CCT 10 156 Response Regulator Gene Family AT3G48100 55.8 2.2e-39 159.1
Csa05g00905 . 26 161 Response Regulator Gene Family AT3G48100 55.9 2.6e-37 152.1
Csa05g02375 . 1 175 Response Regulator Gene Family AT1G59940 65.4 3.4e-56 215.7
Csa01g00186 . 9 158 Response Regulator Gene Family AT1G59940 62.3 5.5e-46 181.8
Csa03g03727 CCT 8 162 Response Regulator Gene Family AT1G59940 55.8 1.5e-40 163.7
Csa05g01629 . 5 151 Response Regulator Gene Family AT1G59940 59.9 3.4e-40 162.5
Csa05g02855 . 98 247 Response Regulator Gene Family AT1G59940 57.3 3.4e-40 162.5
Csa04g01951 CCT 11 154 Response Regulator Gene Family AT1G59940 55.6 1.1e-38 157.5
Csa05g00905 . 24 157 Response Regulator Gene Family AT1G59940 61.2 1.9e-38 156.8
Csa05g02375 . 16 185 Response Regulator Gene Family AT1G10470 67.1 3.7e-55 211.8
Csa01g00186 . 29 167 Response Regulator Gene Family AT1G10470 64.8 3.9e-44 175.3
Csa03g03727 CCT 10 153 Response Regulator Gene Family AT1G10470 58.3 4.4e-40 161.8
Csa05g01629 . 5 156 Response Regulator Gene Family AT1G10470 56.7 1.7e-39 159.8
Csa05g02855 . 98 247 Response Regulator Gene Family AT1G10470 55.3 3.2e-38 155.6
Csa04g01951 CCT 17 154 Response Regulator Gene Family AT1G10470 59.4 4.1e-38 155.2
Csa05g00905 . 26 157 Response Regulator Gene Family AT1G10470 60.6 1.6e-37 153.3
Csa01g00186 . 30 186 Response Regulator Gene Family AT3G48100 69.0 1.1e-51 199.9
Csa05g02375 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Csa05g01629 . 11 150 Response Regulator Gene Family AT3G48100 60.0 2.0e-40 162.5
Csa03g03727 CCT 3 161 Response Regulator Gene Family AT3G48100 53.5 5.7e-40 161.0
Csa05g02855 . 103 262 Response Regulator Gene Family AT3G48100 55.9 1.7e-39 159.5
Csa04g01951 CCT 10 156 Response Regulator Gene Family AT3G48100 55.8 2.2e-39 159.1
Csa05g00905 . 26 161 Response Regulator Gene Family AT3G48100 55.9 2.6e-37 152.1
Csa01g00186 . 30 163 Response Regulator Gene Family AT5G62920 76.1 8.0e-50 193.7
Csa05g02375 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.0e-49 193.4
Csa05g01629 . 9 150 Response Regulator Gene Family AT5G62920 59.2 8.9e-41 163.7
Csa03g03727 CCT 10 155 Response Regulator Gene Family AT5G62920 55.5 1.7e-39 159.5
Csa04g01951 CCT 12 156 Response Regulator Gene Family AT5G62920 56.6 2.9e-39 158.7
Csa05g02855 . 89 262 Response Regulator Gene Family AT5G62920 50.9 4.9e-39 157.9
Csa01g00186 . 29 162 Response Regulator Gene Family AT1G19050 73.1 2.2e-48 189.1
Csa05g02375 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Csa03g03727 CCT 8 158 Response Regulator Gene Family AT1G19050 53.0 9.2e-39 157.1
Csa04g01951 CCT 11 156 Response Regulator Gene Family AT1G19050 54.1 7.8e-38 154.1
Csa05g02855 . 100 244 Response Regulator Gene Family AT1G19050 55.2 7.8e-38 154.1
Csa05g01629 . 3 153 Response Regulator Gene Family AT1G19050 52.3 6.6e-37 151.0
Csa04g01951 CCT 8 262 Response Regulator Gene Family AT2G41310 53.7 3.0e-59 225.3
Csa03g03727 CCT 1 159 Response Regulator Gene Family AT2G41310 71.3 9.6e-58 220.3
Csa05g01629 . 1 152 Response Regulator Gene Family AT2G41310 64.5 6.9e-48 187.6
Csa05g02855 . 94 240 Response Regulator Gene Family AT2G41310 67.3 6.9e-48 187.6
Csa06g02147 . 20 161 Response Regulator Gene Family AT2G41310 62.9 6.1e-44 174.5
Csa01g00186 . 28 159 Response Regulator Gene Family AT2G41310 61.9 2.8e-41 165.6
Csa05g02375 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Csa05g00905 . 26 161 Response Regulator Gene Family AT2G41310 57.4 3.7e-41 165.2
Csa04g01951 CCT 8 262 Response Regulator Gene Family AT3G57040 53.5 3.9e-62 235.0
Csa03g03727 CCT 1 157 Response Regulator Gene Family AT3G57040 77.1 1.7e-60 229.6
Csa05g01629 . 1 155 Response Regulator Gene Family AT3G57040 66.5 1.3e-49 193.4
Csa05g02855 . 99 240 Response Regulator Gene Family AT3G57040 69.0 5.0e-49 191.4
Csa06g02147 . 20 184 Response Regulator Gene Family AT3G57040 56.6 1.7e-44 176.4
Csa05g02375 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Csa01g00186 . 25 159 Response Regulator Gene Family AT3G57040 61.8 3.5e-42 168.7
Csa05g00905 . 24 161 Response Regulator Gene Family AT3G57040 57.9 2.5e-40 162.5
Csa01g00186 . 24 182 Response Regulator Gene Family AT1G74890 68.7 7.2e-52 200.7
Csa05g02375 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Csa05g02855 . 93 250 Response Regulator Gene Family AT1G74890 58.2 5.2e-42 167.9
Csa04g01951 CCT 12 175 Response Regulator Gene Family AT1G74890 51.8 5.4e-39 157.9
Csa03g03727 CCT 8 153 Response Regulator Gene Family AT1G74890 54.8 9.2e-39 157.1
Csa05g01629 . 7 145 Response Regulator Gene Family AT1G74890 59.7 1.6e-38 156.4
Csa05g00905 . 26 162 Response Regulator Gene Family AT2G40670 67.4 1.4e-45 179.5
Csa03g03727 CCT 6 155 Response Regulator Gene Family AT2G40670 55.0 1.5e-39 159.5
Csa05g02375 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Csa05g00905 . 26 162 Response Regulator Gene Family AT3G56380 66.7 2.0e-46 182.2
Csa05g02375 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Csa03g03727 CCT 6 155 Response Regulator Gene Family AT3G56380 55.0 1.8e-39 159.1
Csa01g00186 . 24 160 Response Regulator Gene Family AT3G56380 57.2 5.3e-39 157.5
Csa05g02855 . 93 239 Response Regulator Gene Family AT3G56380 55.4 3.4e-38 154.8
Csa05g01629 . 11 153 Response Regulator Gene Family AT3G56380 56.9 7.6e-38 153.7
Csa04g02646 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Csa02g01797 . 52 256 Response Regulator Gene Family AT3G16857 54.2 9.4e-55 211.8
Csa02g00244 . 59 316 Response Regulator Gene Family AT3G16857 51.8 1.3e-51 201.4
Csa06g01765 CCT,ECH 29 255 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Csa03g01497 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 2.2e-78 290.4
Csa04g02646 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Csa02g01797 . 10 235 Response Regulator Gene Family AT4G16110 54.9 5.2e-59 226.1
Csa01g01861 . 17 249 Response Regulator Gene Family AT4G16110 53.4 6.3e-57 219.2
Csa02g00244 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.7e-52 203.8
Csa04g02646 . 1 412 Response Regulator Gene Family AT4G31920 51.2 7.5e-88 321.6
Csa02g00244 . 13 340 Response Regulator Gene Family AT4G31920 54.8 1.4e-78 290.8
Csa06g01765 CCT,ECH 31 284 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Csa03g01497 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.1 6.0e-69 258.8
Csa02g01797 . 11 259 Response Regulator Gene Family AT4G31920 50.8 2.4e-62 236.9
Csa03g01497 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 1.8e-39 160.6
Csa01g01861 . 16 390 Response Regulator Gene Family AT2G25180 56.2 5.2e-103 372.1
Csa02g00244 . 17 412 Response Regulator Gene Family AT2G25180 50.1 3.2e-84 309.7
Csa03g01497 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 54.7 1.7e-77 287.3
Csa02g01797 . 11 256 Response Regulator Gene Family AT2G25180 56.0 4.9e-69 259.2
Csa06g01765 CCT,ECH 92 325 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Csa01g01861 . 79 303 Response Regulator Gene Family AT2G01760 53.1 1.8e-49 193.4
Csa02g01797 . 72 259 Response Regulator Gene Family AT2G01760 51.5 1.5e-48 190.3
Csa02g01797 . 9 258 Response Regulator Gene Family AT5G58080 51.0 3.7e-62 236.5
Csa01g00568 . 35 585 Response Regulator Gene Family AT5G61380 50.6 5.9e-142 501.5
Csa04g01435 . 38 206 Response Regulator Gene Family AT5G60100 68.6 8.1e-55 211.5
Csa05g00009 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Csa04g01435 . 67 206 Response Regulator Gene Family AT5G24470 55.0 3.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30658 PF00072 Response_reg 9.00E-17 CL0304 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00568 Csa_Chr01 FPKM 4.529875 4.601439 6.542881 6.500822 6.858544 7.655051 6.863213 6.504146 4.681342 5.567433