Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00568 ATGGAAATGGGTCACCTTTCATTTGGTTCATTGGTGAAGATCTGCAGGAAGGGAATCGCGTTTTGTGTAGGTTCTGGTTTACCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGTGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAGGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATCTCCGTGAGTTCAGCTAGGCAGGTCATCGATGCTTTGAATGCAGAGGGACCTGAAATTGATATTATACTGTCGGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACTCGAGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCACGCTTGGACTGGCGGAAAAAAATATTTTGAATTATGAGTTTGATTTGGTGGCATCAGATCCAAGTGATGCTAATACCAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACCAATCCGGAAATGGGAATTACCGCGCCTGCAACACATCAAGAAGATGAGCCTGGTATTGCCGCCACAATTGTAGAGCCTCCTGCTGTTCATTCAGTGCAACATCAGCCAGATGTACCTGGAATTAGTGAGCGCCGAACAGGGCAACCTTCTTCATGTCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTGAAAAATAAGGCAGTAGATATTGAAGACAGTACTAAACGACTTTTGCTGGAAGAAAATCATCAAGAAACTAGTCAGCGTGCGGTTCGTCTTCCCCCAATACAAGAAATTGGGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAACACCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCAGTGGAGAGATCTTGTACACCACCTGCTGGCACAGACGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGTTCTCAAGTCCTTCTGCACTCTCGAAATGGATCTCAACTTGATATTTCAGGCCTTCCTGTGCAAACGCAAACTGCTGCTTATCCTTTTTATATGCCAGAAGGTATGATGTCGGCGCAAATTTACCAAAACAACCTGCATGAAATGCAAAATCATGCGGCAATGATGTCACAGTATGGTCATTTTCACCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCTATGAACATATGTTTACAACCCGGTCAAATGCCAACTACCACTAATACTCATTCATGGCCATCTCTTGGGAATTCATCTTCCAATGAAGCAAAGTCTAACAAATTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGGAAGGAGCGCTGTTTTGACAAAAAGATTAGGTATGTTAATAGGAAACGGCTTGCTGAGAGAAGGCCGCGTGTGCGTGGCCAGTTTGTAAGAAAGGTAAATGGTGTCAACGTAGATCTTAACGGACAGCCTGCATCTGCTGATGATGTTGAGGATGAAGACGAGGAGGAGGAGCTACTATCAAGGGATTCTTCTCATGAGGATGACGGTTCAGGATATTAG 1761 43.55 MEMGHLSFGSLVKICRKGIAFCVGSGLPVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRTLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGITAPATHQEDEPGIAATIVEPPAVHSVQHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDIEDSTKRLLLEENHQETSQRAVRLPPIQEIGEALESHSQGDEHPSSTSFPDSFSVERSCTPPAGTDVHRERNINEENCSQVLLHSRNGSQLDISGLPVQTQTAAYPFYMPEGMMSAQIYQNNLHEMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTTTNTHSWPSLGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEELLSRDSSHEDDGSGY* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3658056 3662728 + CsaV3_1G005680.1 Csa01g00568 515065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00568 586 MobiDBLite consensus disorder prediction 559 575 - -
Csa01g00568 586 SMART REC_2 61 176 IPR001789 GO:0000160
Csa01g00568 586 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 33 562 - -
Csa01g00568 586 Pfam Response regulator receiver domain 63 174 IPR001789 GO:0000160
Csa01g00568 586 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 562 IPR045279 GO:0009736
Csa01g00568 586 MobiDBLite consensus disorder prediction 209 242 - -
Csa01g00568 586 ProSiteProfiles CCT domain profile. 503 545 IPR010402 GO:0005515
Csa01g00568 586 ProSiteProfiles Response regulatory domain profile. 62 180 IPR001789 GO:0000160
Csa01g00568 586 SUPERFAMILY CheY-like 59 186 IPR011006 -
Csa01g00568 586 Gene3D - 61 264 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 343 381 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 478 495 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 550 586 - -
Csa01g00568 586 Pfam CCT motif 503 545 IPR010402 GO:0005515
Csa01g00568 586 MobiDBLite consensus disorder prediction 478 498 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 349 368 - -
Csa01g00568 586 MobiDBLite consensus disorder prediction 258 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00568 Csa-Chr1:3658056 Csa05g00009 Csa-Chr5:54545 1.18E-14 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa01g00568 Csa-Chr1:3658056 3.56E-11 dispersed
Csa07g02285 Csa-Chr7:21265420 Csa01g00568 Csa-Chr1:3658056 1.18E-08 dispersed
Csa01g00568 Csa-Chr1:3658056 Csa03g01497 Csa-Chr3:11108956 7.37E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30658 PF00072 Response_reg 9.00E-17 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00568 K12127 - csv:101220107 1075.46