Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00571 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTTGAGATCGCGGAAAGAGTGTACGTGTTTGATTGTTGCTTCTCTAATGAGGTCCTGGAGGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGACGCATCTTTCATGGTGTTCAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCCCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCACTGGAGAGACAGAAAAATGTACTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCCATTTTGTTGTACCGTAAACAATATGAAGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCACCTAGAGAACTTTTCCAAGTCCTTTCCCCTGTAAACTCACAGCCTTCTCAAATGAGATATCTTCAGTACATTTCTAGGAGAAACCTAGGTTCTGATTGGCCTCCACCTGACGCACCTTTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTAATGGTGGAAAGGGATGGAGGCCTATCATACGCATTTACGGTCAGGATCCATTAACACCACGTAATAGAAGCCCAAAACTTGTTTTTTCAAGTGCAAAGATGGAAGGACATGGTCGCCAGTATCTACAGGTAGCAAGCAGACTGGTAAAAGTGGATGTCCATTGTCACGTTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAAATGGAGATCTACTACGCGAGGAAGTGATATTTAGAATTATGTTTCACACAGCATTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAGGGATCAGTTTCCTAAAGATTTTAGAGCAGAGGTAATTTTTCGGGATGCTGATCATGTTGTGCCAAACCACTCTACAACGGCAAGAAGTGATGATAAAATTGAAATTGAAAGCAACTCGACTGAGGAGTTTTTTGAAGTGGAGGAAATATTTAGCAATACTGTTGACGTGCAGGAAGTTAAGAAGGATTATGATGTTCAAATGGTACATACAAACGAAACAGATTATATTGACCATCAAACAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGTAGGGAGTCAAAATTTTGACAAGAAGATGGATTGTAACATTGAAGCGGTGAAGGACATTACTGTTGATGATATAACTTTTAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCGAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATAGATGATGCTTACGACAAGTTGGAAGGGGTGCAGCATAAAGGCTACGGAGAGGATACTGCCATTGCACACTTAGAATCAAAACTTCCTTTGAAGAAGTTGGAAGCTGATGCATGGAGGGTTGAATATGAGAAGTTGCAATCAGCTTCAAGGAAACAGCCGTCATCAACAGTTAAGCTAACAAATCATACAACTGTAGCTAAACAGAAAACCAAACAACCAGAAGATCAGAACTTTATTGTAAAACAGGCAAAACCAAATACTCTTTCTAGATGGATTTCACATGAGAAAGAATCTTGCACAAACTCCATGCATTTGTTTTATCCATCAACAAGACAAACTGTTGCCTCGCCAACATCTATCAGTTCTCCTACTAAAGATTCTTATTCATATTCGACTTCAAAACCTGCTGCCGCTTCTGCTATTTCAGGACTGCTTCTGTCTGAGACAGCTGATGAACAAAAAAGTAACAAGACGACTCCTAAAAAACCTTTAAGTTCTGCAGCAGAGATTCTGACGAGTAAACCACAATCACCACTCGGTTCCCCAAGACCATTGCCAAACACTGTTCTGCATCAAGATCCTACTCTTCCTCTATCTCCTACTACACTTCTACAGCCACCAGCTCTTCAGGCTAACACATCTTTCTTCCAGGCATCATCTCCTAAATCTTCTTTATCACCCTCTTCATATTTTCACAAAAATGCAAGATCTCCTCCTCCAGCCCCGCCTCCACCACCACCTCCACCTTCCAATCATGCTGCACCAAAAAGTTCATTATTAGTGTGTGGAAATAAACCTAAACAAAATGCTCCACCAGCACCACCTCCACCTCCGATACGTAGAGCTCACCCACAATTACCACTACCACGACCACTCCCTTCACATGGAGCTCTGCTTTCTCCACGCCTATCAGATGCTGGAGCTTTGCCACCACCCCCACCGCCACCTCCTCCAATTCAGAGGACAGCTCCTCCACATTTAACTCAGGGGCAACCGGCTTTAACAGCAACAACTTGTGTTGTCACTTCCCTGCCATCTCCAATTTGTGAAGCATCATCACCTCCTCAACCCACAACTAGTCCTCTTCCAATGGTTCCTTCTTCATCCCAACCTTCAGGAGGTGTGAGTCCACACTTGGGAGCTAAAGGGGTAAGTTCTTCAACTGATATGAAAACAGCACCTACGGTAAGGGGACGTGGGTTCTTGCGATCAATGGGCATAGGGGTGGCTACTCCAGGGCCTCAGCGGTCATCATTGAAACCTCTGCACTGGAGCAAGGTAACTCGGGTACTGCAAGGGAGCTTATGGGAAGAATTGCAAAGATGTGGAGAGTCTGAAAGTGTACCCGAATTTGATGTATCTGAGCTGGAGACACTTTTCTCTGTGATTGTCCCTAAGCCTATGGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTGAGAAGGGCAAACAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAAGAAATGGAGCTTCTCAAGGGATACTCTGGCGACAAGGATAAACTTGGAAAGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAATCGAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAGTTCTCGCAAATTGAAGGAGATTTTGAAGAAAATTCTTTGCCTGGGAAATATGTTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTCTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAGGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGATTGCATCTAAAAGCGATGGCCCCATCTCTGAAATTTTTCATAAGGTCAAAAAATGTAAATAG 3675 42.72 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSNEVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSAILLYRKQYEGEQKTLEMVYRQAPRELFQVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDAPLILDCLILRELPMLNGGKGWRPIIRIYGQDPLTPRNRSPKLVFSSAKMEGHGRQYLQVASRLVKVDVHCHVQGDVVLECIRLNGDLLREEVIFRIMFHTAFVHSNSLKLNRDEVDVLWDARDQFPKDFRAEVIFRDADHVVPNHSTTARSDDKIEIESNSTEEFFEVEEIFSNTVDVQEVKKDYDVQMVHTNETDYIDHQTVWKEDADPPTFQRCKSFVGSQNFDKKMDCNIEAVKDITVDDITFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIAHLESKLPLKKLEADAWRVEYEKLQSASRKQPSSTVKLTNHTTVAKQKTKQPEDQNFIVKQAKPNTLSRWISHEKESCTNSMHLFYPSTRQTVASPTSISSPTKDSYSYSTSKPAAASAISGLLLSETADEQKSNKTTPKKPLSSAAEILTSKPQSPLGSPRPLPNTVLHQDPTLPLSPTTLLQPPALQANTSFFQASSPKSSLSPSSYFHKNARSPPPAPPPPPPPPSNHAAPKSSLLVCGNKPKQNAPPAPPPPPIRRAHPQLPLPRPLPSHGALLSPRLSDAGALPPPPPPPPPIQRTAPPHLTQGQPALTATTCVVTSLPSPICEASSPPQPTTSPLPMVPSSSQPSGGVSPHLGAKGVSSSTDMKTAPTVRGRGFLRSMGIGVATPGPQRSSLKPLHWSKVTRVLQGSLWEELQRCGESESVPEFDVSELETLFSVIVPKPMVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFKKSLNTVNSVCQEVKSSRKLKEILKKILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELIASKSDGPISEIFHKVKKCK* 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3670613 3679554 - CsaV3_1G005710.1 Csa01g00571 515068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00571 1224 MobiDBLite consensus disorder prediction 841 855 - -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 759 782 - -
Csa01g00571 1224 Gene3D - 203 337 - -
Csa01g00571 1224 PANTHER FORMIN-J 761 1220 - -
Csa01g00571 1224 PANTHER FORMIN-J 1 775 - -
Csa01g00571 1224 Gene3D Formin, FH2 domain 901 1223 IPR042201 -
Csa01g00571 1224 Pfam Formin Homology 2 Domain 905 1218 IPR015425 -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 797 814 - -
Csa01g00571 1224 Gene3D Protein tyrosine phosphatase superfamily 14 202 IPR029021 -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 664 695 - -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 707 821 - -
Csa01g00571 1224 SUPERFAMILY Formin homology 2 domain (FH2 domain) 801 1210 - -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 727 744 - -
Csa01g00571 1224 SMART PTEN_C2_2 198 338 IPR014020 -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 603 622 - -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 840 885 - -
Csa01g00571 1224 Coils Coil 1183 1203 - -
Csa01g00571 1224 SMART it6_source 900 1224 IPR015425 -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 856 884 - -
Csa01g00571 1224 ProSiteProfiles Formin homology-2 (FH2) domain profile. 900 1224 IPR015425 -
Csa01g00571 1224 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 540 568 - -
Csa01g00571 1224 MobiDBLite consensus disorder prediction 707 724 - -
Csa01g00571 1224 Pfam C2 domain of PTEN tumour-suppressor protein 199 338 IPR014020 -
Csa01g00571 1224 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Csa01g00571 1224 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00571 Csa01g00260 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00571 Csa-Chr1:3670613 Csa04g02634 Csa-Chr4:25716565 3.35E-134 dispersed
Csa01g00260 Csa-Chr1:1613373 Csa01g00571 Csa-Chr1:3670613 5.75E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00571 - - csv:101221127 2279.6