Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00572 | ATGGGGTGTGTGAATACGAAGCAGGCGGTGTCTGTCACGCCTGCATTCGATCATTCAGGCGTGTTTCGAGATAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGACTTGGGTTGGTGGGGGAGATTGAGAAGGTTTCGAAGCCCAAGGCTAAGGTGAAGAAGAAGAGTTCCAGTGAGTTTAATGGGGTTGGGAGTGAGTTTGGTGAGTCGGGGAGAGCGAGTTCAAAAGGCGGAGGGAATGAAACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATAGAAGGTGAACAAGTGGCGGCGGGTTGGCCGGCTTGGCTTAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGGGAACTCGAAACGGGAAGGATAGTTGCTTTAAAGAAGGTTCGATTCGACAATTTTGAGCCCGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCGGACTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGACCACGACATTACTGGACTCTTGTCTTGTCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCGCGTGGAGTGATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGAGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATACTGGGCACCGGCAACCTCTAACTAGTCGTGTTGTCACTCTGTGGTATCGACCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTTCTAGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTGGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCACCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCGCAGCATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCTTCAACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTTGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCATATCTGAGTATTTCAGTACCAAACCGTATGCATGTGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCGAAACAAAGAGAGGAAACTAGAAGGAAGAAAGGTAGTGGAAGATCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAGAAAGTTATCAAAGGTGTTGAGGCGGAAAAAATGTCTATGGATAAATTGGAAGAGACTATACATGTAAAGAATTCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTGCAAGTTTCGACATCAAGTGGTTTTGCATGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATGTTATTCCAGATCAATTTCAAGAGGACACCTAATTAATGGACTGGAAGATTCTACTACATTGCATTCTATAAGCAATTTGGACTCCAAGATTCATGAAAAGAGTGACATGTCATCCATCAGCCGATCAAGTTCCAAGGGCCATGAATCAAATGAGAGATCAAAGGTTGTGATGAGGAACCCGTGGGGCAAGTTCGAGCGTCCTGATTCCTTCGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCGGCATTGTATTTGCGAGATGAAAAGGAAGCCAAGAGGAAACAGCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGATAGACACGAGAGGCATATCCGACAGACAGTTAGAAGATCATGGTTCCAAAGAGGTAAAAATTGA | 2094 | 44.27 | MGCVNTKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRLGLVGEIEKVSKPKAKVKKKSSSEFNGVGSEFGESGRASSKGGGNETLSFRLGNLNKYIEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRGLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNTGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSVEPYKRGVASSALISEYFSTKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRSRGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKVIKGVEAEKMSMDKLEETIHVKNSSQGDIPFSGPLQVSTSSGFAWARRRRDDASIRCYSRSISRGHLINGLEDSTTLHSISNLDSKIHEKSDMSSISRSSSKGHESNERSKVVMRNPWGKFERPDSFDTSDEYHSQEFAAALYLRDEKEAKRKQLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN* | 698 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3682563 | 3687074 | - | CsaV3_1G005720.1 | Csa01g00572 | 515069 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00572 | 697 | MobiDBLite | consensus disorder prediction | 432 | 459 | - | - | |
Csa01g00572 | 697 | PANTHER | CELL DIVISION PROTEIN KINASE | 56 | 692 | - | - | |
Csa01g00572 | 697 | ProSitePatterns | Protein kinases ATP-binding region signature. | 134 | 157 | IPR017441 | GO:0005524 | |
Csa01g00572 | 697 | MobiDBLite | consensus disorder prediction | 583 | 610 | - | - | |
Csa01g00572 | 697 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 248 | 260 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00572 | 697 | SUPERFAMILY | Protein kinase-like (PK-like) | 122 | 418 | IPR011009 | - | |
Csa01g00572 | 697 | Gene3D | Transferase(Phosphotransferase) domain 1 | 211 | 450 | - | - | |
Csa01g00572 | 697 | MobiDBLite | consensus disorder prediction | 55 | 80 | - | - | |
Csa01g00572 | 697 | CDD | STKc_CDK9_like | 128 | 412 | - | - | |
Csa01g00572 | 697 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 56 | 692 | - | - | |
Csa01g00572 | 697 | Pfam | Protein kinase domain | 128 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00572 | 697 | MobiDBLite | consensus disorder prediction | 423 | 459 | - | - | |
Csa01g00572 | 697 | SMART | serkin_6 | 128 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00572 | 697 | Gene3D | Phosphorylase Kinase; domain 1 | 115 | 210 | - | - | |
Csa01g00572 | 697 | ProSiteProfiles | Protein kinase domain profile. | 128 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00572 | Csa-Chr1:3682563 | Csa03g01943 | Csa-Chr3:15340938 | 0 | dispersed | |
Csa06g01090 | Csa-Chr6:8998306 | Csa01g00572 | Csa-Chr1:3682563 | 7.47E-172 | dispersed | |
Csa01g00723 | Csa-Chr1:4582859 | Csa01g00572 | Csa-Chr1:3682563 | 0 | transposed | |
Csa05g03013 | Csa-Chr5:30389560 | Csa01g00572 | Csa-Chr1:3682563 | 0 | transposed | |
Csa01g00572 | Csa-Chr1:3682563 | Csa05g03012 | Csa-Chr5:30388133 | 3.87E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77748 | PF00069 | Pkinase | 1.90E-67 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00572 | - | - | csv:101220347 | 1371.68 |