Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00572 ATGGGGTGTGTGAATACGAAGCAGGCGGTGTCTGTCACGCCTGCATTCGATCATTCAGGCGTGTTTCGAGATAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGACTTGGGTTGGTGGGGGAGATTGAGAAGGTTTCGAAGCCCAAGGCTAAGGTGAAGAAGAAGAGTTCCAGTGAGTTTAATGGGGTTGGGAGTGAGTTTGGTGAGTCGGGGAGAGCGAGTTCAAAAGGCGGAGGGAATGAAACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATAGAAGGTGAACAAGTGGCGGCGGGTTGGCCGGCTTGGCTTAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGGGAACTCGAAACGGGAAGGATAGTTGCTTTAAAGAAGGTTCGATTCGACAATTTTGAGCCCGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCGGACTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGACCACGACATTACTGGACTCTTGTCTTGTCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCGCGTGGAGTGATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGAGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATACTGGGCACCGGCAACCTCTAACTAGTCGTGTTGTCACTCTGTGGTATCGACCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTTCTAGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTGGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCACCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCGCAGCATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCTTCAACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTTGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCATATCTGAGTATTTCAGTACCAAACCGTATGCATGTGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCGAAACAAAGAGAGGAAACTAGAAGGAAGAAAGGTAGTGGAAGATCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAGAAAGTTATCAAAGGTGTTGAGGCGGAAAAAATGTCTATGGATAAATTGGAAGAGACTATACATGTAAAGAATTCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTGCAAGTTTCGACATCAAGTGGTTTTGCATGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATGTTATTCCAGATCAATTTCAAGAGGACACCTAATTAATGGACTGGAAGATTCTACTACATTGCATTCTATAAGCAATTTGGACTCCAAGATTCATGAAAAGAGTGACATGTCATCCATCAGCCGATCAAGTTCCAAGGGCCATGAATCAAATGAGAGATCAAAGGTTGTGATGAGGAACCCGTGGGGCAAGTTCGAGCGTCCTGATTCCTTCGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCGGCATTGTATTTGCGAGATGAAAAGGAAGCCAAGAGGAAACAGCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGATAGACACGAGAGGCATATCCGACAGACAGTTAGAAGATCATGGTTCCAAAGAGGTAAAAATTGA 2094 44.27 MGCVNTKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRLGLVGEIEKVSKPKAKVKKKSSSEFNGVGSEFGESGRASSKGGGNETLSFRLGNLNKYIEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRGLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNTGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSVEPYKRGVASSALISEYFSTKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRSRGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKVIKGVEAEKMSMDKLEETIHVKNSSQGDIPFSGPLQVSTSSGFAWARRRRDDASIRCYSRSISRGHLINGLEDSTTLHSISNLDSKIHEKSDMSSISRSSSKGHESNERSKVVMRNPWGKFERPDSFDTSDEYHSQEFAAALYLRDEKEAKRKQLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3682563 3687074 - CsaV3_1G005720.1 Csa01g00572 515069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00572 697 MobiDBLite consensus disorder prediction 432 459 - -
Csa01g00572 697 PANTHER CELL DIVISION PROTEIN KINASE 56 692 - -
Csa01g00572 697 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Csa01g00572 697 MobiDBLite consensus disorder prediction 583 610 - -
Csa01g00572 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Csa01g00572 697 SUPERFAMILY Protein kinase-like (PK-like) 122 418 IPR011009 -
Csa01g00572 697 Gene3D Transferase(Phosphotransferase) domain 1 211 450 - -
Csa01g00572 697 MobiDBLite consensus disorder prediction 55 80 - -
Csa01g00572 697 CDD STKc_CDK9_like 128 412 - -
Csa01g00572 697 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 56 692 - -
Csa01g00572 697 Pfam Protein kinase domain 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00572 697 MobiDBLite consensus disorder prediction 423 459 - -
Csa01g00572 697 SMART serkin_6 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00572 697 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Csa01g00572 697 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00572 Csa-Chr1:3682563 Csa03g01943 Csa-Chr3:15340938 0 dispersed
Csa06g01090 Csa-Chr6:8998306 Csa01g00572 Csa-Chr1:3682563 7.47E-172 dispersed
Csa01g00723 Csa-Chr1:4582859 Csa01g00572 Csa-Chr1:3682563 0 transposed
Csa05g03013 Csa-Chr5:30389560 Csa01g00572 Csa-Chr1:3682563 0 transposed
Csa01g00572 Csa-Chr1:3682563 Csa05g03012 Csa-Chr5:30388133 3.87E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77748 PF00069 Pkinase 1.90E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00572 - - csv:101220347 1371.68