Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00575 ATGGTTTCAGAGAGAGTAAAGAATGGTGTAAAAGTTGATGATCATCAGTTATTCAGGAACAGTACAAACATGAAGAAGGTTTGTGTAATTGGAGCTGGAGCTTCAGGCTTGGTAGCAGCCAGAGAGCTAAGAAAAGAAGGCCACAAAGTTATCGTTTTTGAGCAAAACGACGACGTGGGTGGCCAATGGTTATACGATCCAAATGTACAAAATGAACATCCTTTAGGAAGATCCAAATTCCTTAATGTTCATAGCAGTATTTATTCTTCTTTAAGGATTGCTTCTCCAAGAGAAATCATGGGTTTCTCTGATTTTCCTTTTGTTGCTAAGAAATTTGGGCATGATTCTAGGAGGTTTCCTGGCCATTATGAGTTGTTTTTGTATTTGAAAGATTTTTGTCGTTGTTTTGATTTGAATCAACTTATAAGGTTTAATACTAGAGTTGAATACGTGGGAGTTATTGATCATAATAAAAACAGTATTGTTGCTGGTGATATTCAATGGGTTGTTAGAAGTAGAGATTATAAGTCTAAGCATAAGAAGATTAATGGGGATGATGATGATGATGATGATGATGATGATGATGATGATCTGATTGAAGAAGTTTTTGATGCTGTTGTTGTTGCTAATGGACATTATTCTCATCCTAGATTGCCTACCATTAAAGGAATGGACAAATGGAAGAGAAAGCAAATTCATAGTCATGTTTATAGGGTTCCTGATCCATTTTGCAATGAGGTAGTGGTGGTGGTGGGAAACTCTCAAAGTGGGCAAGACATATCGCTAGATCTAATAGAAGTGGCAAAGGAAATTCATTTAAGCACAAAATTCTTAGACAATGTTACTCAAGGTTTATCCAAAGTCATTCAAAAGTATCAAAACTTGCACCTTCAGCCACAGATTGAATCTCTTGAAGAAGATGGGAGAGTGGTGTTTGTTGATGGATCTTCTATAGTTGCTGATACTATTTTATATTGCACTGGGTATTCATATGCGTTTCCATTTCTTGACACGAAAGGAATAGTTGTTGTGGATGATGATCGAGTGGGACCTTTGTACGAGCATACATTTCCCCCTTCCTTGGCTCCCTCACTTTCATTTATAGGCATTCCACGAAAGCTCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAACTGCTGTCTGGGAAAAGGACATTGCCATCATATGATGATATGATGCAATCCATCAAACAGTTTTATCACTCGAAAGATATTGCTGGCATCCCAAAGCATAACACACATGATTTAGCTGAATTTGAGTATTGTGACAGGTATGGGGATAACGTCGGATTTCCACATTTGGAGGAATGGAGGAAGAAACTGTGTGTAACAGCTATTATAAATTCCTCAAACAATCTCGAAACGTTTCGAGATTCGATGGATGACGATGAGGATCTTCAAGAGGCCTATCAAAGCCCTCATTTCACTCAACTTGAAGCTCAAGTTTTTCCTTTGGACCACATGTAA 1500 37.8 MVSERVKNGVKVDDHQLFRNSTNMKKVCVIGAGASGLVAARELRKEGHKVIVFEQNDDVGGQWLYDPNVQNEHPLGRSKFLNVHSSIYSSLRIASPREIMGFSDFPFVAKKFGHDSRRFPGHYELFLYLKDFCRCFDLNQLIRFNTRVEYVGVIDHNKNSIVAGDIQWVVRSRDYKSKHKKINGDDDDDDDDDDDDDLIEEVFDAVVVANGHYSHPRLPTIKGMDKWKRKQIHSHVYRVPDPFCNEVVVVVGNSQSGQDISLDLIEVAKEIHLSTKFLDNVTQGLSKVIQKYQNLHLQPQIESLEEDGRVVFVDGSSIVADTILYCTGYSYAFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSYDDMMQSIKQFYHSKDIAGIPKHNTHDLAEFEYCDRYGDNVGFPHLEEWRKKLCVTAIINSSNNLETFRDSMDDDEDLQEAYQSPHFTQLEAQVFPLDHM* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3696677 3703694 - CsaV3_1G005750.1 Csa01g00575 515072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00575 499 Gene3D - 220 326 IPR036188 -
Csa01g00575 499 PRINTS Flavin-containing monooxygenase (FMO) signature 25 41 IPR000960 GO:0050660|GO:0050661
Csa01g00575 499 PRINTS Flavin-containing monooxygenase (FMO) signature 49 73 IPR000960 GO:0050660|GO:0050661
Csa01g00575 499 PRINTS Flavin-containing monooxygenase (FMO) signature 313 340 IPR000960 GO:0050660|GO:0050661
Csa01g00575 499 PRINTS Flavin-containing monooxygenase (FMO) signature 378 391 IPR000960 GO:0050660|GO:0050661
Csa01g00575 499 PANTHER DIMETHYLANILINE MONOOXYGENASE 20 490 - -
Csa01g00575 499 SUPERFAMILY FAD/NAD(P)-binding domain 284 454 IPR036188 -
Csa01g00575 499 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 20 490 - -
Csa01g00575 499 SUPERFAMILY FAD/NAD(P)-binding domain 23 272 IPR036188 -
Csa01g00575 499 Pfam Flavin-binding monooxygenase-like 295 412 IPR020946 GO:0004499|GO:0050660|GO:0050661
Csa01g00575 499 Pfam Flavin-binding monooxygenase-like 25 276 IPR020946 GO:0004499|GO:0050660|GO:0050661
Csa01g00575 499 Gene3D - 26 470 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00575 - - - csv:101221607 997.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00575 Csa-Chr1:3696677 Csa03g00301 Csa-Chr3:2546039 9.89E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00575 . . . . . Bda14g00882 . Bpe15g00590 . . . . . . . . . . . Bhi08g01128 . . Lac10g0125 Hepe07g2484 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00575 Csa_Chr01 FPKM 6.736659 6.815173 3.358757 3.112339 12.754981 13.539993 13.495395 0.73248 0.682949 0.604357