Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00581 ATGAGTCATTGTGTAGTTCCAAAATGGAATCTGAGCCACGAAAGACAAGTGCAAGTCGAAGAAGAGGAAGAAAAGAGATCTTTTCACGTGCCTGCTGAGAAGAATCAACACAGTACCACCACTAAACCTCTTGTCCCATTCTACCAGCAAATGGCAAAGCAAGGAATTACAGAACTAACCTGGCAAAATGGGCAACTCGCTCTGCATGGGATTGATGGGCTACAGCCAACAATCCCACCAAAGCCCACATGGAACCGAGCCAATGACACGTTGGAGTCCGTAGTCAATCAAGCTAAACTCCAAACTCAAGGCCCAAACTTGATCCAGCAAGGCGAGCCAGTGGTTCATACTGGCCGCACCCTCGCACCCTCTGGCGCGAATGGGAAATGGGTTGAGAGGGGGAACAACCAAGAACCGACGGCGAGAAAAAGAACACGATCAACTTCCGATTATGGTGGGAAAAATGTCAGCACAAGCAACAACAATAACAACAACAACAGCAATACTATGCAAGTCGACCACGGTGATCACAGTGTGTGTGGAAGTGCGAGTGCAGCGTTTTGTAGGGATAATGAGACTACTTTGATGACATGGGCTTCCTTCGATTCCCCCCGAAGCTTGAAAACTAAATCCATCGATGAAGATTCTGCTTGTCATGTTGAATCGGAAAATCAAGAGGAAGAACAAGATACAAAGCGTGTAGCGAATCGTTCTCATTCAGCTAGACGAAGTCGAGCTGCTGCTATACATAATCAATCAGAACGGAGGAGGAGAGACAGAATTAATGAGAAGATGAAAGCCCTGCAGAAGTTGGTGCCAAATGCAAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTAATTGAATACTTAAAGCAGCTTCAAGCACAAGTTCAGTTCATGAGTGTGAGGAGTATGCAACAGATGATAATGCCTATAGGAATGCAGCAACAACTTCAAATGTCGCTCCTAGCTCGTATGGGCATGGGGGTTGGTCTAGGCATGGGAATGGGGATGCTTGACATGAGTGGTATGGCACGTTCAGCCCAGCAAACACTTCCTCCACTCATCCATCCTACATCCGTTCCCACTACACCTCCTGCATTTGTTCCGCCACACTTCTTGTTACCCCCTTCAATTCCAAGGCAGGATCCAACACAAGCCAAGCCTGCCACCAATGGCTCTGTTGATCCATTTTGTGCCTTTCTAGCACAAACCATGAATATGGATATTTACAACAAAATGGCAGCTTTCTATCGCCAACAAGTTAATCAGACAACAAATGCAATGAGCAGCCCAACACAATCAAACAATATGCAAGGAAGTTAA 1329 46.05 MSHCVVPKWNLSHERQVQVEEEEEKRSFHVPAEKNQHSTTTKPLVPFYQQMAKQGITELTWQNGQLALHGIDGLQPTIPPKPTWNRANDTLESVVNQAKLQTQGPNLIQQGEPVVHTGRTLAPSGANGKWVERGNNQEPTARKRTRSTSDYGGKNVSTSNNNNNNNSNTMQVDHGDHSVCGSASAAFCRDNETTLMTWASFDSPRSLKTKSIDEDSACHVESENQEEEQDTKRVANRSHSARRSRAAAIHNQSERRRRDRINEKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQFMSVRSMQQMIMPIGMQQQLQMSLLARMGMGVGLGMGMGMLDMSGMARSAQQTLPPLIHPTSVPTTPPAFVPPHFLLPPSIPRQDPTQAKPATNGSVDPFCAFLAQTMNMDIYNKMAAFYRQQVNQTTNAMSSPTQSNNMQGS* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3727778 3731264 + CsaV3_1G005810.1 Csa01g00581 515078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00581 442 SMART finulus 251 300 IPR011598 GO:0046983
Csa01g00581 442 Coils Coil 251 271 - -
Csa01g00581 442 MobiDBLite consensus disorder prediction 17 32 - -
Csa01g00581 442 MobiDBLite consensus disorder prediction 219 258 - -
Csa01g00581 442 CDD bHLH_AtPIF_like 245 306 - -
Csa01g00581 442 MobiDBLite consensus disorder prediction 17 39 - -
Csa01g00581 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Csa01g00581 442 MobiDBLite consensus disorder prediction 150 173 - -
Csa01g00581 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 306 IPR036638 GO:0046983
Csa01g00581 442 Gene3D - 240 305 IPR036638 GO:0046983
Csa01g00581 442 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 437 IPR031066 -
Csa01g00581 442 MobiDBLite consensus disorder prediction 219 237 - -
Csa01g00581 442 MobiDBLite consensus disorder prediction 122 173 - -
Csa01g00581 442 Pfam Helix-loop-helix DNA-binding domain 250 295 IPR011598 GO:0046983
Csa01g00581 442 PANTHER TRANSCRIPTION FACTOR PIF7 3 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00581 - - - csv:101222307 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00267 Csa-Chr1:1668618 Csa01g00581 Csa-Chr1:3727778 1.95E-54 dispersed
Csa01g00581 Csa-Chr1:3727778 Csa06g00909 Csa-Chr6:7311297 2.37E-44 dispersed
Csa02g02212 Csa-Chr2:19895721 Csa01g00581 Csa-Chr1:3727778 4.17E-11 dispersed
Csa01g00581 Csa-Chr1:3727778 Csa07g01462 Csa-Chr7:14980031 1.35E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30659 PF00010 HLH 1.20E-13 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00581 Csa_Chr01 FPKM 13.575397 12.886821 12.549921 11.963731 9.768116 9.437677 9.17592 30.725435 29.183168 33.788837