Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00590 ATGGGGGAGGAGAAGAGGCACCAGATGATGCAGAATCTCTTCGGAGATCAATCCGAGGAGGAGGAGGAGATTGATTCAGAGCACGAGTCCAATCCTCAACCCAATTATGCCTCTGATGAAGGAGAAGGAGGGGCGGAGCCTGAAGGTGAAGGTGAAGTGGAGGGACATGGGGAGGTGGAAATTGAGAGTGAAGGTGAGTTGCAGGATGCCGATCCGGATCCTGGGGAGAGTGAGGGTGAAAGGGATCAAAGTTCTCAAGAAGTAGACGTGGGTCACCATAGAGAAGAAGAAAGTGAAGGGAAAGAGGTGGATAGCGACGATAGGGAAGAATATGATCAAAGAGTGGTAACAAGCAGGAGGCATGATTTAGTTGAAAGTGAATCCGAGAGGTCCGAGGAAAACCATTATATTGACAATGAAGACGAAGAGGTGGATCAAACTAGGAGTCCAAGGGAGGAGGAAGATCACAATTCACATCCAGTTGCTGAAATTCGTGACGTATTTGGTGACTCTGACGAGGAAGAGGAAGCAGAATATGCAGTTGGAAATGAAATTAAGCAAGATTCAGCTAGGTCACCTATGGAAGAGGAGGGGAGCTTTGAGAAGAGTCCAAGACCTGATGATATAATTCCTGATGAAGATGCTCGGTACGAGTCAGATGCTCGTTATGAATCAGAAGAGGAAAATTTTGAGGTAAAACATAAAGAGAAGCCAGTTGGGCCTCCGTTGGAGCTAGAGATTCCATTACGTCATCCTCCTGCTCGCCCAGAAAAGATGAACATGATAAAAGTTTCCAATATTATGGGCATTGACCCAAAACCATTTGATCCCAAAACATATGTGGAAGAGGATATATTTGTGACAGACGAATCTGGAGCCAACAAACGCATACGCTTGGAAAATAACATTGTGCGCTGGAGGACAGTTAGGAAACCTGATGGCACAACAAAGTATGAAAGCAATGCACGATTTGTGAGGTGGTCAGATGGCAGTTTGCAACTGTTAATTGGGAATGAAGTGCTTGACATAAATGTGCAAGATGCAAAGCATGATCAAGCACACTTGTTTCTTCGGCATGGGAAGGGAATTTTACAATCTCAAGGTAGGCTTATGAGGAAGATGAGGTTCATTCCATCATCTCTGACATCAAATTCTCACCGCTTGTTAACTGCTTTGGTTGATTCACGACATAAGAAGGTGTATAAGGTTAAGAATTGCATAACGGACATTGATCCTGAAAGGGAAAAGGAGGAAAAAGAAAGGGCTGAAAGTCAAACAATCCGGGCAAATGTGCTTCTTAATCGGAAAAAGGAAAAGGTTAGCAAGAAATATGCTCCTGTCATTGATAGAAGGCGCCAACTATCACCTGGGTTCTTGGAAGATGCCCTTGAGGAGGAAGATGAAACAGATTATATTGATTCACGTCGCTCCCGTCGCCGCTTTGAGGAAGATTTGGAAGCGGAAGCTCGAGCAGAAAAACGTATTATGAATGCAAAGAAGGGAACTAGGGACATCCCTCGGAAGCCATCATTTCACGCTTCTAAATCATCTGGGCGTCCTGTGGATTTCTCAGACAGTGACAGGGAAGAGTCTGAGTACGAAACTGAAGGGGAAGATGATGCTCCTGGGAGAGTTGAAGAACCAGAGCAGGAGTATGAGGAAGACGGGGAAGAAGATGATGAACGTGATGAAGAGGCAGAAGTTAATGAAGTTTCAGATGTGGATGAAGAGGCTGAGGAGCCCAAACATAAGGTTAGAGATTATGGGAGCAGTCACAAGCGCAAGGGGATTGAGTCTGATGAGGAGTCACCTCCAAGAAAGGTTGCAACCCACCGTAGGATGGCAGTTAATCCGGCGATGTCTAGCTCCTTCCAGAGCTCTCCATTTCCATTGCATAAGAACACCATGCTTCCCCCAGTTTTTTTCGCGGATATGAATCCTGATAAATTCACCCACAAGACCAATGAGGCTCTAGCTGGAGCTCATGAATTGGCATTGAATTCTGGCCATGCTCAATTGACACCGCTTCATTTGGCGGTTGCTTTGGTTTCTGATCCGAGTGGGATATTGAGCCAAGCGATTGCTAGTTCCGGCGGTGAAAATGCTCATAAAGAAGTGGAGACGGTTTTCAAGCGGGCGTTGAAGAAGCTACCATCTCAATCTCCTGCACCTGATGAAGTGCCGGCGAGTACTACTCTGATTAAGGTGATTCGAAGAGCACAAGCTGCGCAGAAATCGCGAGGAGACACGCATTTAGCCGTTGATCAATTGGTTCTTGGCCTTCTGGAGGATTCTCAGATTGGGGATTTGCTTAAGGAAGCTGGTGTCACCACTGCGAAAGTTAAATCTGAGGTCGAGAAACTTCGTGGAAAAGAAGGAAAGAAAGTGGAGAGTGCATCTGGAGACACAACCTTCCAGGCACTCAAGACTTATGGACGAGACCTGGTAGAACAAGCGGGGAAACTCGACCCAGTTATTGGCCGTGATGAGGAAATTCGTAGAGTCGTGAGGATTTTATCAAGAAGAACTAAGAATAACCCAGTTCTTATTGGGGAGCCTGGTGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCCCAGCGGATTGTAAGAGGAGATGTCCCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGATATGGGTGCTCTGGTGGCAGGGGCTAAGTACAGAGGAGAATTTGAAGAGAGATTGAAGGCAGTATTGAAGGAGGTTGAAGATGCAGAAGGGAAAGTCATATTGTTTATTGACGAGATTCATCTTGTTCTTGGTGCTGGAAGAACTGAAGGGTCTATGGATGCTGCCAATCTTTTCAAGCCAATGCTGGCTAGAGGGCAGTTACGTTGCATTGGGGCAACTACTCTTGAAGAGTACAGGAAGTATGTTGAGAAGGATGCAGCATTCGAGAGAAGGTTTCAACAAGTTTATGTGGCTGAACCGAGTGTGCCTGACACTATCAGTATTCTTCGAGGATTGAAAGAGAGATACGAAGGTCACCATGGTGTTAGAATTCAAGACCGAGCTCTTGTCGTTGCAGCACAGCTATCGAGTCGATATATTACTGGGCGACACCTTCCTGATAAGGCAATTGATTTAGTTGATGAAGCTTGTGCAAATGTGAGAGTCCAGCTCGATAGCCAGCCTGAAGAAATTGATAACTTGGAGAGGAAGCGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAAAAGGAGAAGGACAAGGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGATGATTTGAGAGATAAGCTTCAACCTTTGTTGATGAAATATCGCAAGGAGAAAGAAAGGATTGATGAGATTAGAAGACTTAAACAAAGGAGGGAGGAACTACAAATAGCTTTGCAAGAGGCTGAGAGGAGATATGATTTGGCAAGGGCTGCTGATTTGCGATATGGAGCAATCCAAGAAGTAGAATCTGCAATAGCACGGATCGAAGGGAACACCGATGAGAACCTGATGTTAACTGAAACTGTTGGACCGGAACAAGTAGCCGAAGTGGTGAGCCGCTGGACTGGAATACCTGTCACAAGGCTCGGCCAGAATGATAAAGAGAGACTTGTCGGGCTTGCTGACAGACTGCACAAGAGAGTCGTGGGGCAGAATCAAGCTGTGGATGCTGTTGCTGAGGCTGTTCTACGATCAAGAGCCGGATTGGGAAGGCCGCAACAGCCAACTGGATCTTTCTTGTTCCTGGGTCCAACCGGTGTTGGCAAAACCGAGCTTGCAAAGGCGCTCGCTGAGCAACTTTTTGATGATGAAAACCTCCTGGTGAGGATTGACATGTCTGAATATATGGAGCAACACTCAGTTTCACGCCTCATTGGTGCTCCTCCTGGGTATGTTGGACATGAGGAAGGAGGGCAACTCACCGAGGCAGTAAGGCGGAGGCCTTACAGTGTTATTCTGTTTGATGAAGTGGAGAAAGCTCACATCGCTGTCTTCAACACTCTTCTCCAAGTTTTAGACGACGGAAGACTGACTGATGGCCAAGGCCGCACTGTAGATTTTAGAAACACGGTCATTATCATGACTTCAAATCTTGGAGCTGAACATCTCCTTGCTGGATTAATGGGCAAGTGCACGATGCAAGTTGCTCGTGATAGAGTCATGCAAGAGGTGCGGAAACACTTCAGGCCAGAGTTGCTTAATCGTCTTGACGAAATAGTTGTATTCGATCCACTCTCACACGAACAGCTGAGGAAAGTTGCTAGGCTGCAAATGAAAGATGTTGCTGCTCGCCTGGCCGAGAGAGGCGTTGCATTGGCTGTAACCGATGCGGCCCTCGACTATGTCTTAGCAGAGAGCTACGATCCAGTGTATGGTGCCAGACCAATAAGAAGATGGCTGGAGAAAAGGGTGGTGACGGAACTGTCCAGAATGTTGATCAAAGAAGAAATCGATGAGAATTCAACTGTGTACATAGATGCAGCGGCTGATGGGAATAGCTTGGCGTATAGAGTGGAGAAGAACGGTGGTTTTGTTGATGCAGCGACTGGCAAAAAATCTGATGTTTTGATTCAAATCAACAATGTTCCAAGAAGTGATGCTGCTCAGACTGTGAAGAAGATGAAGATCGAAGAAACTGATGAAGATGAAATGGAAGAGTGA 4659 46.19 MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPQPNYASDEGEGGAEPEGEGEVEGHGEVEIESEGELQDADPDPGESEGERDQSSQEVDVGHHREEESEGKEVDSDDREEYDQRVVTSRRHDLVESESERSEENHYIDNEDEEVDQTRSPREEEDHNSHPVAEIRDVFGDSDEEEEAEYAVGNEIKQDSARSPMEEEGSFEKSPRPDDIIPDEDARYESDARYESEEENFEVKHKEKPVGPPLELEIPLRHPPARPEKMNMIKVSNIMGIDPKPFDPKTYVEEDIFVTDESGANKRIRLENNIVRWRTVRKPDGTTKYESNARFVRWSDGSLQLLIGNEVLDINVQDAKHDQAHLFLRHGKGILQSQGRLMRKMRFIPSSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKKEKVSKKYAPVIDRRRQLSPGFLEDALEEEDETDYIDSRRSRRRFEEDLEAEARAEKRIMNAKKGTRDIPRKPSFHASKSSGRPVDFSDSDREESEYETEGEDDAPGRVEEPEQEYEEDGEEDDERDEEAEVNEVSDVDEEAEEPKHKVRDYGSSHKRKGIESDEESPPRKVATHRRMAVNPAMSSSFQSSPFPLHKNTMLPPVFFADMNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALVSDPSGILSQAIASSGGENAHKEVETVFKRALKKLPSQSPAPDEVPASTTLIKVIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEVESAIARIEGNTDENLMLTETVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLADRLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHIAVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLAGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAARLAERGVALAVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVYIDAAADGNSLAYRVEKNGGFVDAATGKKSDVLIQINNVPRSDAAQTVKKMKIEETDEDEMEE* 1553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3780760 3791714 + CsaV3_1G005900.1 Csa01g00590 515087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00590 1552 Pfam C-terminal, D2-small domain, of ClpB protein 1411 1491 IPR019489 -
Csa01g00590 1552 MobiDBLite consensus disorder prediction 1 254 - -
Csa01g00590 1552 Gene3D - 794 987 IPR027417 -
Csa01g00590 1552 Gene3D - 988 1188 IPR027417 -
Csa01g00590 1552 SMART AAA_5 843 988 IPR003593 -
Csa01g00590 1552 SMART AAA_5 1241 1385 IPR003593 -
Csa01g00590 1552 SMART ClpB_D2_small_2 1411 1502 IPR019489 -
Csa01g00590 1552 Gene3D - 647 792 IPR036628 -
Csa01g00590 1552 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1319 1337 IPR001270 GO:0005524
Csa01g00590 1552 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1352 1366 IPR001270 GO:0005524
Csa01g00590 1552 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1290 1308 IPR001270 GO:0005524
Csa01g00590 1552 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1245 1263 IPR001270 GO:0005524
Csa01g00590 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1492 IPR027417 -
Csa01g00590 1552 MobiDBLite consensus disorder prediction 189 241 - -
Csa01g00590 1552 Gene3D - 1194 1410 IPR027417 -
Csa01g00590 1552 ProSitePatterns Chaperonins clpA/B signature 1. 939 951 IPR018368 GO:0005524
Csa01g00590 1552 MobiDBLite consensus disorder prediction 459 610 - -
Csa01g00590 1552 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 648 1506 - -
Csa01g00590 1552 CDD AAA 826 981 - -
Csa01g00590 1552 ProSitePatterns Chaperonins clpA/B signature 2. 1275 1293 IPR028299 -
Csa01g00590 1552 Coils Coil 1050 1099 - -
Csa01g00590 1552 MobiDBLite consensus disorder prediction 49 63 - -
Csa01g00590 1552 Pfam AAA lid domain 988 1087 IPR041546 -
Csa01g00590 1552 Pfam ATPase family associated with various cellular activities (AAA) 848 961 IPR003959 GO:0005524|GO:0016887
Csa01g00590 1552 CDD AAA 1215 1410 - -
Csa01g00590 1552 Gene3D - 1411 1509 - -
Csa01g00590 1552 MobiDBLite consensus disorder prediction 576 609 - -
Csa01g00590 1552 Pfam AAA domain (Cdc48 subfamily) 1241 1405 IPR003959 GO:0005524|GO:0016887
Csa01g00590 1552 MobiDBLite consensus disorder prediction 469 510 - -
Csa01g00590 1552 ProSiteProfiles Clp repeat (R) domain profile. 647 791 IPR004176 -
Csa01g00590 1552 SUPERFAMILY Double Clp-N motif 648 801 IPR036628 -
Csa01g00590 1552 Pfam Clp amino terminal domain, pathogenicity island component 661 706 IPR004176 -
Csa01g00590 1552 Pfam Clp amino terminal domain, pathogenicity island component 740 790 IPR004176 -
Csa01g00590 1552 Pfam Leo1-like protein 261 420 IPR007149 GO:0006368|GO:0016570|GO:0016593
Csa01g00590 1552 MobiDBLite consensus disorder prediction 77 167 - -
Csa01g00590 1552 PANTHER ATP-DEPENDENT CLP PROTEASE 648 1506 - -
Csa01g00590 1552 Coils Coil 897 917 - -
Csa01g00590 1552 MobiDBLite consensus disorder prediction 527 575 - -
Csa01g00590 1552 Coils Coil 1107 1144 - -
Csa01g00590 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 1189 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00590 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1705.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00590 Csa01g00282 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00590 Csa-Chr1:3780760 Csa03g02465 Csa-Chr3:22957501 0 dispersed
Csa01g00282 Csa-Chr1:1778618 Csa01g00590 Csa-Chr1:3780760 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00590 Csa_Chr01 FPKM 113.248337 126.964554 67.403168 63.527298 119.28038 131.708817 116.182045 15.589879 17.123812 12.290421