Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00608 ATGGCTGCAAAGCTTCTGCATTCTTTAGCTGATGAAAATCCAGATCTACAGAAGCAAATAGGATGCATGACTGGGATCTTGCAGTTGTTTGATCGTCAGCATGTACTCAGTGGAAGACATATGAGACACAAGCGGCTTCCTCCTGGCACTTCTCATCTAAATATTGGCAGCGCAGTAAAAGAGTACAATGCCTTTCAGAGAGAGGCAACTGACATGTCCCTAAATGAGAGTTTCAATGAGAAACAAAGGTTTAATAAAGAACTATCGAGAGCTTCCTTCTCTTCTTGCTCGTCTTCCTTATCCTCCAGTGATTACAACAAAACAGCTCCGTCGCAAGCGTCCTCATTCGATCAGATACTTTTATCAAGAACGCCCTCAAGGGATTCTATAGTGAACCAGTCAAATACCTCTCCTCGTGTCGGGAGACAACATCTTGATCTTCGAGATGTTGTGAAGGATTCTATGTATAGGGAAGCCAGAACGTTATCAGTTAAGACATCTACTAGTGAGGAACCACTGAGTCGTTCTATGAAGCATAGAGACTCTCCAAGGCCTGTACAGCTATCCCAATCCGCAGATGGGGCTTCAAAGGTTGATACAGATTGGAAACAGAAGATGCCTGTTGATTTAAAGGAGTCTCTTCTGGTTCTTGCTAAACTTCGAGATGCACCATGGTATTATAATGAAGTTGTAGAACACGATCGGTTGTCTCACGAAGTAAAAGATGGATATTTGCAATCATTCTCTAGAGATGCTCCTCGGTTTTCATATGATGGGAGAGAGGTTAATCGATTATCCTTTGAATCGCGAGATACCATTCGGTCAGCTCCAAAATTTAAAGACTTTCCAAGGCTCTCACTGGACAGCCGGGAGAGTTCAATTAAGGGTTCCAAATCTGGGTCAAATACAACTAGGAATTTGAAGAACTTGCACAGTAGTGATTGCTCTAGTGAAAATTCTTCTGATCCACCACGACCATCAGGATCTCGAAAGCATCCCCCTAGTGTTGTGGCAAAGTTAATGGGATTGGAAGCACTTCCAGGTTCCCCCTTGGCTAGTGATGCTCAGGCTAAAGGTGACCCCTTTGTTAGCTCACTGGATGGTGCAAACTTTATCAGGCCAATTAGAACTGACTCTCCTCGGAACACGTTGAAAGGCCCAACTTCACCAAGATGGAAGAATCCTGATTTTGTTATGAAACCTATACCAAATTCGAAGTTTCCTGTGGAAGTTGCACCATGGAGGCAGCCAGATGGAACTCGAGGCTTTGATAAATCTGCTATGAAGCATTCAAAAGGGTTAGCTGGATCGTCTAACCCGTTTCCTTCTGTTTATAGTGAAATTGAAAAAAGATTGGAAGACTTGGAGTTTAAACAATCAGGGAAAGATCTTAGAGCACTAAAACAGATCCTTGACGCTATGCAATCAAAGGGGCTCTTGGATACTAGGAAGGAGGAGGAACCTTCTGCAACTCAAAGAGAGAATGAACCGAAACGGGAGAGCGCTAGTGTTAATTCTAGGTTGACCAGTGAACAAAGTCGGAGAAAAACCCAAAAGGCTGCAACAACTAGCAGGCCCGATTCTTCCAGGTGTGGGGAATCTCCAATTGTGATCATGAAACCAGCAAAACTTGTAGAAAAATCTGGAATCCCAGCTTCATCAGTTCTTCAAATTGATGGCCTTCCTGGTCTCCCGAAGCTTCAGAAACCCTCACAGGGTAAAAAGAGCCCCAGTGGTAGCCGAGTAGTTAAAGATACATCTCCGGAAAACAGTCACAGGGACTCCGGTGCAAATTCCACCAAAAAGAAAGATAATGCAAGAAACGTTAGACAAACCCATACTTCTTCTAAGCCTCAACATTTACCTAAGGAAAACACAGTAAGCTCAATAAAAACCACAGGGTCCGTGAGCCCAAGACTGCAACAGAAGAAAACTGAGCAAGACAAACGATCTCGACCACCAACTCCTCCATCTGACACAAACAAAACCAAATGGAAATCCAACAGACAGGGAACTGAATCTGGTTCTCCTGTTGGAAGATCGAGAGTGAAACCATCCCATGTCTCCCAAATGGATGACCAATTGAGTGAAGTAAGCAATGAGTCAAGAACTTTGAGCAACCAGGGGGATGACTTATCTCAAATATCTGACAGTAATTTATCCTTGGACTCAAAGACAGATATTGAAGTCACCAGCAGTGAACTTCCTGCTGACATTAATGGCAGTCATGGTTTACAAATGAAGACTTCAAAGTACTCAGATTCTCGTTCATTGGAAAATGCAGAACTTGCTACTCCTGCTCCTGAACACCCTAGTCCAGTCTCCATTCTTGATGCTTCTATATATAGGGACGACGAACCTTCTCCATCTCCTGTTAAGCAGATATCAAAGGCCCTTAAAGGCAATAGGACTTTAGGCTCTGGAGATTGTGGTGAATACCAATGGAGTGCCACAGAAAACAGTGTGGAGCCCGGTCTTAGCACAGAAATTAACCGCAAGAAACTGCAAAACATTGACAACTTGGTTCAGAAGCTCAGGCGCCTGAACTCTCACTATGATGAAGCAAAAACAGATTACATTGCATCATTATGCTTAGCAACATTTCAACTCCATCCATCTGGTCATCCAATCAACCCCGAGTTGTTCTTCGTCTTGGAGCAAACCAAGACAAGCAGTTTGTTAAGAAAGGACGACTGTAGCTCTTTGAAAGTTACAGATTTAAAACTGAACCAAGAGAAATCTCATCGCAAGCTCATTTTTGATGCCGTGAATGAGATTCTTGCTAGAGAATTGTCTGTTGTTGCTGCAATACCCGAGCCTTGGACAACATCCAAAAAACTAGCAACTAAAACTCTTAGTGCTCAAAAGCTTCTGAAGGAGCTATGTTCTGAAATAGAACAGCTCCAAACAAAGAAACCGGAGGAGGATGAGAGTTTGGATAGTATCTTAAAGGAAGACATGATGCAAAGATCTGGAAGTTGGACTGATTTCTATGGTGACGTCTCCAACGTTGTCTTAGATATTGAAAGATTGGTCTTCAAAGACTTAGTCGATGAAATCGTATATGTCGAGGCTGCTCATTTACGCGCCAAGTCAGGCAGACGAAGACAGTTATTTACTTGA 3123 43.07 MAAKLLHSLADENPDLQKQIGCMTGILQLFDRQHVLSGRHMRHKRLPPGTSHLNIGSAVKEYNAFQREATDMSLNESFNEKQRFNKELSRASFSSCSSSLSSSDYNKTAPSQASSFDQILLSRTPSRDSIVNQSNTSPRVGRQHLDLRDVVKDSMYREARTLSVKTSTSEEPLSRSMKHRDSPRPVQLSQSADGASKVDTDWKQKMPVDLKESLLVLAKLRDAPWYYNEVVEHDRLSHEVKDGYLQSFSRDAPRFSYDGREVNRLSFESRDTIRSAPKFKDFPRLSLDSRESSIKGSKSGSNTTRNLKNLHSSDCSSENSSDPPRPSGSRKHPPSVVAKLMGLEALPGSPLASDAQAKGDPFVSSLDGANFIRPIRTDSPRNTLKGPTSPRWKNPDFVMKPIPNSKFPVEVAPWRQPDGTRGFDKSAMKHSKGLAGSSNPFPSVYSEIEKRLEDLEFKQSGKDLRALKQILDAMQSKGLLDTRKEEEPSATQRENEPKRESASVNSRLTSEQSRRKTQKAATTSRPDSSRCGESPIVIMKPAKLVEKSGIPASSVLQIDGLPGLPKLQKPSQGKKSPSGSRVVKDTSPENSHRDSGANSTKKKDNARNVRQTHTSSKPQHLPKENTVSSIKTTGSVSPRLQQKKTEQDKRSRPPTPPSDTNKTKWKSNRQGTESGSPVGRSRVKPSHVSQMDDQLSEVSNESRTLSNQGDDLSQISDSNLSLDSKTDIEVTSSELPADINGSHGLQMKTSKYSDSRSLENAELATPAPEHPSPVSILDASIYRDDEPSPSPVKQISKALKGNRTLGSGDCGEYQWSATENSVEPGLSTEINRKKLQNIDNLVQKLRRLNSHYDEAKTDYIASLCLATFQLHPSGHPINPELFFVLEQTKTSSLLRKDDCSSLKVTDLKLNQEKSHRKLIFDAVNEILARELSVVAAIPEPWTTSKKLATKTLSAQKLLKELCSEIEQLQTKKPEEDESLDSILKEDMMQRSGSWTDFYGDVSNVVLDIERLVFKDLVDEIVYVEAAHLRAKSGRRRQLFT* 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3885741 3891545 - CsaV3_1G006080.1 Csa01g00608 515105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00608 1040 Pfam Domain of unknown function (DUF4378) 869 1019 IPR025486 -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 290 326 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 159 199 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 733 774 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 556 720 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 373 394 - -
Csa01g00608 1040 Coils Coil 831 858 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 733 760 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 183 197 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 611 641 - -
Csa01g00608 1040 PANTHER LONGIFOLIA PROTEIN 1 1040 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 413 442 - -
Csa01g00608 1040 PANTHER LONGIFOLIA PROTEIN 1 1040 IPR033334 GO:0051513
Csa01g00608 1040 MobiDBLite consensus disorder prediction 586 610 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 97 117 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 656 679 - -
Csa01g00608 1040 Pfam DUF761-associated sequence motif 333 348 IPR032795 -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 478 535 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 290 334 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 478 501 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 571 585 - -
Csa01g00608 1040 MobiDBLite consensus disorder prediction 688 720 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00608 - - - csv:101202986 1994.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00608 Csa01g00300 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00608 Csa-Chr1:3885741 Csa04g02152 Csa-Chr4:22340423 2.70E-06 dispersed
Csa02g00484 Csa-Chr2:3437142 Csa01g00608 Csa-Chr1:3885741 1.07E-07 transposed
Csa02g01164 Csa-Chr2:11356388 Csa01g00608 Csa-Chr1:3885741 4.50E-26 transposed
Csa01g00300 Csa-Chr1:1884527 Csa01g00608 Csa-Chr1:3885741 0 wgd
Csa01g00608 Csa-Chr1:3885741 Csa05g03035 Csa-Chr5:30515084 3.99E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g459 Blo04g00797 . Bda06g00519 Bda15g00627 . . . Bma12g00962 Cmo13g01113 . . Cma11g00213 . Car11g00192 Sed08g0284 . Cpe04g01455 Bhi02g00090 Tan09g2035 Cmetu02g0174 . Hepe09g0278 . . Cla06g01534 Cam06g1692 Cec06g1755 Cco06g1754 Clacu06g1660 Cmu06g1606 Cre06g2418 Cone2ag0795 Cone16ag0214 Cone13ag0031 Cone19ag0040 Lsi02g00125 Csa01g00608 Chy12g01492 Cme12g01932 . Blo15g00341 Bda11g01764 Bda14g00886 Bpe07g00753 Bpe15g00573 Bma03g00858 . Sed08g2125 . Cmo11g00215 Cma13g01068 . Car13g00904 Car18g00008 . . Bhi08g01076 Tan05g2350 Cmetu12g0276 Lac10g0173 Hepe07g2455 . . Cla04g01147 Cam04g1203 Cec01g1715 Cco01g1760 Clacu04g1230 Cmu04g1210 Cre01g1506 . Csa01g00300 Chy02g02436 Cme02g01823
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003334 4 1 2 2 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00608 Csa_Chr01 FPKM 12.155679 14.432895 22.969427 21.54114 40.308025 44.544567 42.396175 11.21794 11.193774 10.427422