Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00609 ATGGATATTTCAGCATGTGATACAAACGAAGGGTTGGAGCATAAAATGAAAAAGAGAAAGCAAGAACAGTTTGATGATGCTTCTGAAGGAAACAATACGGGTAGTGTTTGTTCTGGTTTTGAATTTGCATCTTCAATGGATAAAATTCTGTTTGAAAAAGATCCTTCTCCAGATGCCACGTTAGTTATGTGCTCGAAGTTGGAGTCTGAAACAGGAAAAAATCTTCCAGAGATATGTAATCTAAAAGGGAATGTTCATGAAAAGGAGCATAATGATGATGAAAAATTGTCAAAGGATACGGATACAGAGAATGAAAATATTAATGGTTCTTATAATCTTATCCTGAATGCAGCAGAAGTAAAACAAAATGTTGCTGGATATAGTGTTGAAATGGAAGAGCCAAGTTCTATGAATGCTTACAAAGAAGACTCTGGGATCTCTGAAGATCCAGGTGGTTTGAGAGGTCATGAGGTATCTGATCAAGGAAACATTGACACTGTCGCCCAAGAACTGAGCAAGGAGATGATAGATGTGAAGAAGGATGTTCATTCTAGAGAAAAACTCTCTGACCCTGATTATCCTTTGCCATGTAATGAGCTGGAATACGATGGGGATGGTTCTTTGAAAAGTTTAGATGTAGAACAAATAAATGACACATTTGGTAATAATGCTTCAGAAAAGATCGTGGAAGGCCCTGTGGAGGAAGCTTCTGTTTGCTGTTCATTTGGTGAGCATGATGATGAAGCTTCAACGATCAAGGAACTGATTATGTCAACTCCTTCCTGTGTGCCTCCAGGACTGGAAAATGCTGAAACTGCCAAGGAAGAAGTTGTATGTTTCACTGATTCTGGTGAGACAAGCAGTGTTGTTAATGCTATGGCTGAAGAGGAAACTCCACCGCTGGTTTTGGATACTTCAGAGAAAGGAGATTCAATTGGATCTACAACGAAGAAGCTTCTTGTTCTTGATGTAAATGGACTGCTTGCAGATTTTATTTGTTACGTTCCACCTGGATATAAGCCAGACATTATAATAAGACAAAAAGCAGTGTTCAAGAGGCCATTTTGTGATGATTTTATTAAGTTTTGTTTTGAAAGATTCGAGGTGGGTGTTTGGTCGTCAAGAACTCGGAGAAATGTGGACATGGTGATAGATTTTCTAATGAGAGACTATAGAGAAAAATTACTATTTTGCTGGGATCAATCACACTGTACTGACACCACGTTCTCTACCGTAGAGAACAAGCACAAGCCTTTAGTCTTAAAGGAAATAAAAAAACTGTGGAAATACCTCAAGCCACGAGAGTTCAATGCATCAAACACCCTACTGTTGGATGATTCCCCACACAAGGCATTGTGCAATCCGGCAAACACTGCAATATTTCCTGTAACATATCGGTTTAGGGATACTGACGATACGTCTTTAGGACCGGGAGGCGATCTTCGGGTTTTTCTGGAAGGTTTATCCATGGCAGAAAACGTTCAAAAATACGTTGAGCAGAATCGGTTTGGCCAACGTCCCATTACAGAAAAGAACGCGTCTTGGAAGTTTTATAGACGGATCATATATTTTGTTGAGCGAAAAAATGATCAGGAGAATAACAATTCTTTCCAATGGAACTGA 1623 39.19 MDISACDTNEGLEHKMKKRKQEQFDDASEGNNTGSVCSGFEFASSMDKILFEKDPSPDATLVMCSKLESETGKNLPEICNLKGNVHEKEHNDDEKLSKDTDTENENINGSYNLILNAAEVKQNVAGYSVEMEEPSSMNAYKEDSGISEDPGGLRGHEVSDQGNIDTVAQELSKEMIDVKKDVHSREKLSDPDYPLPCNELEYDGDGSLKSLDVEQINDTFGNNASEKIVEGPVEEASVCCSFGEHDDEASTIKELIMSTPSCVPPGLENAETAKEEVVCFTDSGETSSVVNAMAEEETPPLVLDTSEKGDSIGSTTKKLLVLDVNGLLADFICYVPPGYKPDIIIRQKAVFKRPFCDDFIKFCFERFEVGVWSSRTRRNVDMVIDFLMRDYREKLLFCWDQSHCTDTTFSTVENKHKPLVLKEIKKLWKYLKPREFNASNTLLLDDSPHKALCNPANTAIFPVTYRFRDTDDTSLGPGGDLRVFLEGLSMAENVQKYVEQNRFGQRPITEKNASWKFYRRIIYFVERKNDQENNNSFQWN* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3896966 3900580 - CsaV3_1G006090.1 Csa01g00609 515106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00609 540 ProSiteProfiles FCP1 homology domain profile. 313 488 IPR004274 -
Csa01g00609 540 Gene3D - 272 505 IPR023214 -
Csa01g00609 540 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 56 528 - -
Csa01g00609 540 Pfam NLI interacting factor-like phosphatase 318 495 IPR004274 -
Csa01g00609 540 SUPERFAMILY HAD-like 315 476 IPR036412 -
Csa01g00609 540 SMART forpap2 316 473 IPR004274 -
Csa01g00609 540 MobiDBLite consensus disorder prediction 1 36 - -
Csa01g00609 540 MobiDBLite consensus disorder prediction 7 26 - -
Csa01g00609 540 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 56 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00609 - - - csv:101203219 935.636
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00609 Csa01g00303 CCT
Csa01g00303 Csa01g00609 ECH
Csa01g00609 Csa01g00303 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02650 Csa-Chr6:23307771 Csa01g00609 Csa-Chr1:3896966 1.48E-61 transposed
Csa01g00303 Csa-Chr1:1893702 Csa01g00609 Csa-Chr1:3896966 3.09E-108 wgd
Csa01g00609 Csa-Chr1:3896966 Csa04g01029 Csa-Chr4:8057689 3.61E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g458 . . . . . . . . . . Cma10g00292 Cma11g00214 . Car11g00193 Sed08g0286 Cpe20g00082 Cpe04g01454 Bhi02g00089 Tan09g2033 Cmetu02g0987 . . . . . . . . . . . . . . . Lsi02g00127 Csa01g00609 Chy12g01491 Cme12g01931 . . . . . Bpe15g00572 . . . . Cmo11g00216 . . Car13g00903 . . Cpe18g00711 Bhi08g01074 . . Lac10g0174 Hepe07g2454 . . . . . . . . . Lsi06g01406 Csa01g00303 Chy02g02435 Cme02g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013596 0 3 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00609 Csa_Chr01 FPKM 35.639194 34.504097 36.046131 31.666327 66.297836 59.266197 56.135506 1.718619 1.625743 1.313788