Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00613 ATGAGAGGCATCGGAAGCCAAAGAGTTCCGCTGCTTGATCGTGGGGGAGGAGGAAAGAGCAATGGCTCATCGGATGATCGTCAGTTAACAGACCTGGAACTTGGGGATGCTGTGCCGCCCGCAAATGTTGGATTTGGCAGAGTACTTTCACTTGCCAAGCCTGAAGCGGGAAAGTTGATAATTGCTACCATTGCTCTTCTGATTGCTTCCACGACTAGTATATTGATCCCAAAATTTGGTGGAAAGATTATTGACATTGTATCTGGAGATATAGACACGCCCGAACAGAAGAGTAAAGCTCTAAAGGAAGTCACTAGCACCATTGTATACATCACATCGATTGTCTTAGTTGGTTCGGTGTGCTCAGCTGTTCGAGCTTGGTTATTTTCTTCTGCTAGTGAGAGAGTTGTTGCTCGCTTAAGGAAGAATTTGTTTACTCATCTTCTTAATCAGGAAATAGCCTTCTTTGATGTTACTCGAACAGGGGAACTTCTCAGTAGGCTATCTGAGGACACCCAAATAATTAAGAATGCAGCAACCACCAATCTTTCTGAGGCCCTAAGAAATCTATCAACTGCAACAATTGGGTTGACCTTCATGTTTTCAACTTCTTGGAAGTTAACATTATTGGCTTTGGTTGTTGTCCCTGTTATTTCTGTCGCTGTTCGTAAATTTGGTCGCTTCCTTCGTGAGCTTTCTCACAAGACTCAAGCAGCTGCTGCTGTCTGTGCTTCAATTGCTGAGGAATCTTTTGGTGCTGTGCGCACTGTCAGATCTTTTGCTCAAGAATCCTATGAGGTATCACGGTACTCTAAGAAAGTCGAGGAGACATTGCAACTTGGACTTAAACAAGCTAAAGTGGTTGGATTATTCTCTGGAGGTCTCTATGCAGCATCGACTTTATCTGTTATTGTTGTTGTGATATATGGAGCTAACCTGACAATCAAAGGGTTCATGAGTCCGGGATCTCTAACATCTTTCATCCTTTATAGTTTAACTGTTGGAACTTCTGTATCGGGGTTGTCAGGATTGTACACTGTTGCCATGAAAGCTGCTGGAGCTAGTAGACGAGTTTTTCAGCTCCTTGATCGTGTATCAACAATGACAAATTCAGGAAACAAGTGCCCTATTGGTGACCTAGATGGAGAAGTTGAGTTGGATGATGTCTGGTTTGCATATCCGTCCCGCCCTGATCACACTGTGCTGAAGGGAATATCATTGAGATTGCAGCCTGGTTCTAAAGTAGCTCTAGTTGGTCCGAGTGGCGGTGGAAAAACCACCATAGCAAACCTGATCGAAAGATTTTATGATCCCACTAAAGGACGGATTCTGATAAATGGGGTTCCTCTTGTGGAGATATCACACGACCATTTACACAAAAGGATCAGTATTGTCAGCCAAGAGCCTGTTCTTTTCAACTGCTCCATAGAAGAGAATATAGCCTATGGTTTAGATGGAAAAGTTGATAGCATTGATGTAGAAAATGCAGCTAAAATGGCCAATGCACATGACTTCATATTAAACTTCCCTGAGAAGTATAAAACCCACGTCGGAGAACGCGGGGTGAGGCTTTCGGGTGGTCAGAAACAAAGAGTAGCTATAGCAAGAGCTCTACTTATGAACCCAAGAATCCTCCTTTTGGATGAAGCCACAAGTGCTCTAGATGCTGAAAGTGAACACCTAGTACAGGATGCCATGGATTCTCTGATGAAAGGCAGGACCGTCCTAGTCATTGCTCATAGGCTATCTACCGTCAAGACTGCAGATACCGTGGCCGTCATTTCTGATGGTCAAATCGTTGAAAGTGGAACACATGAAGAACTTCTTAGCAAGGATGGTGTCTATACTGCACTAGTGAAAAGGCAACTACAAGATACAAAAACAACATAA 1890 43.44 MRGIGSQRVPLLDRGGGGKSNGSSDDRQLTDLELGDAVPPANVGFGRVLSLAKPEAGKLIIATIALLIASTTSILIPKFGGKIIDIVSGDIDTPEQKSKALKEVTSTIVYITSIVLVGSVCSAVRAWLFSSASERVVARLRKNLFTHLLNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTATIGLTFMFSTSWKLTLLALVVVPVISVAVRKFGRFLRELSHKTQAAAAVCASIAEESFGAVRTVRSFAQESYEVSRYSKKVEETLQLGLKQAKVVGLFSGGLYAASTLSVIVVVIYGANLTIKGFMSPGSLTSFILYSLTVGTSVSGLSGLYTVAMKAAGASRRVFQLLDRVSTMTNSGNKCPIGDLDGEVELDDVWFAYPSRPDHTVLKGISLRLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGRILINGVPLVEISHDHLHKRISIVSQEPVLFNCSIEENIAYGLDGKVDSIDVENAAKMANAHDFILNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVISDGQIVESGTHEELLSKDGVYTALVKRQLQDTKTT* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3910631 3914888 - CsaV3_1G006130.1 Csa01g00613 515110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00613 629 CDD ABC_6TM_AtABCB27_like 62 358 - -
Csa01g00613 629 PIRSF ABC_prm/ATPase_B 20 629 - -
Csa01g00613 629 Gene3D ABC transporter type 1, transmembrane domain 109 381 IPR036640 GO:0005524|GO:0016021
Csa01g00613 629 SUPERFAMILY ABC transporter transmembrane region 47 363 IPR036640 GO:0005524|GO:0016021
Csa01g00613 629 MobiDBLite consensus disorder prediction 1 28 - -
Csa01g00613 629 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 626 IPR039421 -
Csa01g00613 629 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa01g00613 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 622 IPR027417 -
Csa01g00613 629 Pfam ABC transporter 402 552 IPR003439 GO:0005524
Csa01g00613 629 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 626 - -
Csa01g00613 629 Pfam ABC transporter transmembrane region 59 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa01g00613 629 SMART AAA_5 411 605 IPR003593 -
Csa01g00613 629 Gene3D - 382 625 IPR027417 -
Csa01g00613 629 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524
Csa01g00613 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 621 IPR003439 GO:0005524
Csa01g00613 629 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00613 - - - csv:101206026 1165.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00613 Csa-Chr1:3910631 Csa05g02153 Csa-Chr5:24591368 1.45E-110 dispersed
Csa05g00563 Csa-Chr5:3690920 Csa01g00613 Csa-Chr1:3910631 2.72E-102 dispersed
Csa06g01126 Csa-Chr6:9341071 Csa01g00613 Csa-Chr1:3910631 3.34E-69 dispersed
Csa01g00613 Csa-Chr1:3910631 Csa05g02977 Csa-Chr5:30108267 6.37E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00613 Csa_Chr01 FPKM 62.992165 69.787689 57.876202 58.442024 27.677011 27.945662 28.73702 124.286926 121.603195 124.335228