Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00614 ATGTCTTTGGAACAAGAATTTCTCTTCCTAATTCCTTCGACAATGGCCAATAATCTCAATCTCTTCCTTTGTTTCCTTCTCTTTGTTTGTTTCTTCACTCTCTGCCTTAGCCCTGGTGGTCTAGCTTGGGCTCTAATTTCAAAGCCAAAAAACCAACCCATCATTCCTGGCCCTAGTGGCACTCCATTTCTTGGCCAAGTTTCAACCTTCACCAATTCCTTAACCCATAGACTCCTTGCTAATCTTGCTCATACCTTAAAGGCCAAGTCTTTAATGTCATTCTCAATTGGGTTCACTCGTTTTGTGATTTCAAGCAACCCCATCACAGCCAAAGAGCTTTTGAATAGCTCAGCTTTTGCTGATCGTCCAATTAAAGAATCAGCTTATGAGCTTTTGTTTCATAGAGCAATGGGGTTTGCTCCATATGGTGAATACTGGAGGAATCTAAGGAGAATTTCATCTACTTTTTTGTTTAGTCCTAAAAGGATTTGTGGCTTTGGGGTTTTGAGGGAGAGAATCGGGGTTAAAATGATGAAGGAAATTGAGGGTTTGATGGTGAAAAATGGGAAAGTTGAAGTTAGGAAACTTTTGCATTTTGGGTCCTTGAGTAATGTTATGGAGAGTGTGTTTGGTAAAAGTGTGGAGTTTGGTGATTGGGAGATTGAGGAATTAGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCATTTTCCTGTCTTGGGTTGGTTGGATTTACAAGGTGTGAGAAAAAGGTGTAGAGTTTTGGTGGGTAAAGTTAATGTTTTTGTTGGGAAAATTATTGAAGAACATAGAATGAAGAGAAGGGTTATTGTTGGTGATGAAGAAAATAATAACAATAACAACAACCCTAATGATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGTTATGGGAAATGATCTTCAGAGGAACAGACACAGTAGCAATTCTCCTAGAATGGATTTTAGCACGAATGGTTCTTCATCCTGACATCCAAGCTAAACTTCGATCCGAAATCGACCAAGTTGTGATGAAAACCGGTCGAAACATCTCGAATTTGGACCTCCCAAATCTCCCTTATCTCCATGCAGTCGTCAAAGAAACTCTTAGAATGCACCCTCCTGGCCCACTCCTCTCTTGGGCACGCCTTGCCATCCATGACACCCATGTTGCAGGCCATTTCGTTCCCGCCGGCACCACAGCGATGGTCAACATGTGGGCCATAACCCATGACGACCAAATTTGGCCTGATCCAACAATATATAACCCAAACCGATTCATTAAAGATGATGTGGCTATAATGGGATCAGACCTACGACTCGCACCATTTGGATCTGGTAGAAGGGTTTGTCCTGGTAAAGCAATGGGGCTAGCCACTGTTGAACTGTGGCTTGCTCAGTTGGTTCATAAGTTCGAATGGGTTCAAGCTTCTAGCTCGAAAAACAAAGTGAATTTATCCGAGTGTTTGAAGCTATCTTTGGAAATGAAACACCCTTTGATTTGTAGGGCTATCCCCAGGAATGATGTGGGGTTTGAGTCTCACCCATGA 1611 41.65 MSLEQEFLFLIPSTMANNLNLFLCFLLFVCFFTLCLSPGGLAWALISKPKNQPIIPGPSGTPFLGQVSTFTNSLTHRLLANLAHTLKAKSLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISSTFLFSPKRICGFGVLRERIGVKMMKEIEGLMVKNGKVEVRKLLHFGSLSNVMESVFGKSVEFGDWEIEELVSEGYDLLGSFNWSDHFPVLGWLDLQGVRKRCRVLVGKVNVFVGKIIEEHRMKRRVIVGDEENNNNNNNPNDNEDGDFVDVLLDLEKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQAKLRSEIDQVVMKTGRNISNLDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVAGHFVPAGTTAMVNMWAITHDDQIWPDPTIYNPNRFIKDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVHKFEWVQASSSKNKVNLSECLKLSLEMKHPLICRAIPRNDVGFESHP* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3922185 3924566 + CsaV3_1G006140.1 Csa01g00614 515111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00614 536 Pfam Cytochrome P450 56 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PANTHER CYTOCHROME P450 FAMILY PROTEIN 5 527 - -
Csa01g00614 536 SUPERFAMILY Cytochrome P450 55 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Csa01g00614 536 Gene3D Cytochrome P450 44 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PANTHER CYTOCHROME P450 78A7-RELATED 5 527 - -
Csa01g00614 536 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00614 536 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00614 Csa-Chr1:3922185 Csa05g02212 Csa-Chr5:24906086 0 dispersed
Csa02g01568 Csa-Chr2:14836015 Csa01g00614 Csa-Chr1:3922185 1.66E-170 transposed
Csa01g00614 Csa-Chr1:3922185 Csa06g02088 Csa-Chr6:18629600 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00614 K20619 - csv:101203458 1046.96