Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00615 TCTGAACGAACAAGAGTTAAAGTCGGCATCGAGCAAGAAGAGGTTAATAAGTCTCCTTACTGTCACTTGGGTAGTGCCATGGAAGAAGAGATTGGAGAAGAATTCAAGAGGAGTGGCTTCACGTTCGATGAAGAGGAAGAGATTCTCAAGAAATGTGTCACTTTCTGTGTTAACTACAATCTAAAGCCTTCGGATATTGTTTCTAGCTGGGAGGTTTACTATCTCAACAGGCTATTAGATGGGTCAGTGGTTGAACTTGAACAGCTGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAACTGTCATTAAAGGGGAACCGGATCTTCATGTTTACTCAAGCAAAGATGTTGACGTGATTTTGAATGATGAGAACGAAGATCTAAATGAAGATATTCTTAAGACCCCAAATGGGAAATCTCAGAGCCTCCACAAAGAGCGATTGGATTTGACACCTTACACGAACGAAGGATTGTTCTCATCGGGAAAGCCTTCAAAGCATGAGACACCCTTTGGCCAAAGAACAGAAAAGTTTGTTGTGAGGTTCAACATTAATAACATGCCTGATATGGTGACTGCTGTGAAGGTAGATAATAGTGAGAATGATGAAGATACAATCATCAAGAAGGTTCGTCCCCTACAAGGATGCTCATTGACAGTCCATGGATCAGGATTTGGACTTGAACCTAATTGCAGGTTCATGTATGACAAGGATGAAGATAGGTTTAATGCTCTTGATAACCGAATCATGAGACATGCTAAAGCTCTTGCTGCATCTGGGCTCTACGAGGAAGCAGTGGACCCAACAGTTGCTTCACAGAAAAGCATTTTTGCGGTGGGCATGATTTATTGTGATGGTGAAGGACACTTGAACGATAAGTCCATCTTGTTGCAAAGCAGTATCGCGCATTCAGGGGGACAGCGAGTTCGTCTAGAATTACAGAACTTAAGCCAATTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCGTCCAAACTTGTAGATTCTTTTCCTTTGTCTGCCACTATAGACCCCATTCTGCCTCCAGCAAAGAAGATCGCTTTGAACCATGATATTCAACCAATTAATCAATCTTCTACACCGTCAGAACTATCGATGATCATTGCATCCGGCCCCTATACAACAACGGACAACTTATTGTTTGAGCCTTTGACTGAGTTATTAGCATATGCAAAAAGAAAAGTTCCCCAGCTACTAATATTGCTTGGACCATTTGTTGATTCTGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAAATTTGAAGTTTTAAGAAGGGTACAAGATTATGCAGAACACATGGGTCCTGATGCGCGTGTGCTGTTGATGCCATCTACAAGGGATGCTAATCACGACTTTGCTTTTCCCCAGCCTGCGTTCGACATTCCATCTGATCTCAAACTTCAGATATCCAGTCCCCCAAACCCATGCATCTTGGAAGCAAATCAGGCAAAGATAGCCTGCTGCACCATGGACATTCTCAGACACCTCAGTGGAGAAGAGCTGTCAAGAAATCTAACAAAGGGAGGAACCAACGATCGCCTGAGCACGCTTGCTAGTCATATACTTCGCCAGCGCAGCTTTTATCCTCTATACCCTCCGGCCGAAGGAGTTCCACTGGACTTTTCACTTGCCCCACAAGCTCTTGACATCTCCGTAATACCTGATATTCTCATTCTTCCATCCGACATGAAACATTTCGTGAAGGTTATATCTCTTGGTGAAGGAGGTTCAGAGGAAGAGCAAGCAAGATGCGTATGTGTGAATCCTGGAAGATTGGCCAAGGGTGAAGGAGGGGGTACTTTTGTCGAGCTCAATTACTTCGGTAGGCCTGACCAGATAAATGCTATGGTTGTCAGCATATGA 1947 43.19 SERTRVKVGIEQEEVNKSPYCHLGSAMEEEIGEEFKRSGFTFDEEEEILKKCVTFCVNYNLKPSDIVSSWEVYYLNRLLDGSVVELEQLDGFLQHLQNEQKETVIKGEPDLHVYSSKDVDVILNDENEDLNEDILKTPNGKSQSLHKERLDLTPYTNEGLFSSGKPSKHETPFGQRTEKFVVRFNINNMPDMVTAVKVDNSENDEDTIIKKVRPLQGCSLTVHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASGLYEEAVDPTVASQKSIFAVGMIYCDGEGHLNDKSILLQSSIAHSGGQRVRLELQNLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLTELLAYAKRKVPQLLILLGPFVDSEHSDIKRGTVEMSFEEIFKFEVLRRVQDYAEHMGPDARVLLMPSTRDANHDFAFPQPAFDIPSDLKLQISSPPNPCILEANQAKIACCTMDILRHLSGEELSRNLTKGGTNDRLSTLASHILRQRSFYPLYPPAEGVPLDFSLAPQALDISVIPDILILPSDMKHFVKVISLGEGGSEEEQARCVCVNPGRLAKGEGGGTFVELNYFGRPDQINAMVVSI* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3933069 3940185 + CsaV3_1G006150.1 Csa01g00615 515112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00615 648 PIRSF DNA_pol_alpha_2 25 640 IPR016722 -
Csa01g00615 648 Gene3D - 25 103 IPR043034 -
Csa01g00615 648 Gene3D - 365 541 - -
Csa01g00615 648 Gene3D - 542 644 - -
Csa01g00615 648 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 27 648 IPR016722 -
Csa01g00615 648 Pfam DNA polymerase alpha/epsilon subunit B 387 596 IPR007185 GO:0003677|GO:0006260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00615 K02321 - csv:101206268 1248.8