Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00618 ATGAATTCAGACAAACATAAACTCCTAACTTTCTCAGCCACTTCCTTTTTATTTCTGATTTCTCTAGCAGCGGCATTTGACTTCCTCGACCCGAATGGAAAAATCGAAATCAAATGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACAGTGACTATAACAAACTCTCAGACATACCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGGGAGAGGTCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCAGTTCCACGTTTACAGGAACTATACCACACAGTTGCAAAAGAGATCCATCGGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAGACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCATTCCGGTAGTTCGAATAAGACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACATGTAGCCAGGCAAAGATTGTGCCACCATCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCTCTTACTCACAGTTTCTTGCTTCTCAAACGCCAACCTGTTGTGTCTCCATGTCATCTTTCTATAACTCGAAAGTTACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGAAGAAACGGCATGTATCCTGACGGAATCAGATCTTCAAAGCATAACGGAATTGAATGCACCTACAAATGACAGTGCTCCATTGGTGCAGTGCACGACACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTTAAGATAACCATCAGTAATCTCAACTATCGACTTAACTATTCACAATGGACTCTTGTTGTTGAGCACCCCAATTTCAACAACACGGTGGAAGTTTATAGCTTTGTTTATAAGCCACTCACCCCCTTCATCTCTAAGAACGACACTGCTCTGTTTCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATTATTTTTCAAAAGGATTCAACATTTACATTGGAACATGGATGGGCTTTCCCTCAAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATCTCCTGATTCTTACCCATTTCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTTCTTCCCATATTCTTTACATTGTTATCTTAG 1323 42.63 MNSDKHKLLTFSATSFLFLISLAAAFDFLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKGEVIWSMQGAEATDQGDCSSSTFTGTIPHSCKRDPSVVDLLPGAPYNRQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASQTPTCCVSMSSFYNSKVTPCKACACGCQEETACILTESDLQSITELNAPTNDSAPLVQCTTHNCPIQVHWHVKENYKGYWRVKITISNLNYRLNYSQWTLVVEHPNFNNTVEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVHSEIIFQKDSTFTLEHGWAFPQKVYFDGDECVMPSPDSYPFLPNLANANPILLSTLACIFLPIFFTLLS* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3946497 3948404 - CsaV3_1G006180.1 Csa01g00618 515115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00618 440 Pfam COBRA-like protein 49 214 IPR006918 GO:0010215|GO:0031225
Csa01g00618 440 PANTHER COBRA-LIKE PROTEIN 8 435 - -
Csa01g00618 440 PIRSF COBRA 3 440 IPR006918 GO:0010215|GO:0031225
Csa01g00618 440 PANTHER PROTEIN COBRA 8 435 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00618 - - - csv:101203708 892.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00618 Csa01g00340 CCT
Csa01g00618 Csa01g00340 ECH
Csa01g00340 Csa01g00618 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00618 Csa-Chr1:3946497 Csa04g01018 Csa-Chr4:7964202 0 dispersed
Csa03g00533 Csa-Chr3:4452146 Csa01g00618 Csa-Chr1:3946497 1.97E-32 transposed
Csa03g01498 Csa-Chr3:11114152 Csa01g00618 Csa-Chr1:3946497 5.94E-39 transposed
Csa03g02318 Csa-Chr3:20725839 Csa01g00618 Csa-Chr1:3946497 5.99E-38 transposed
Csa01g00340 Csa-Chr1:2128397 Csa01g00618 Csa-Chr1:3946497 0 wgd
Csa01g00618 Csa-Chr1:3946497 Csa04g01017 Csa-Chr4:7962730 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00341 . 48 447 COBRA Gene Family AT5G60920 80.3 7.5e-210 726.5
Csa04g01018 . 44 450 COBRA Gene Family AT5G60920 74.7 7.3e-197 683.3
Csa04g01017 . 31 427 COBRA Gene Family AT5G60920 67.8 5.3e-179 624.0
Csa01g00340 CCT,ECH 55 455 COBRA Gene Family AT5G60920 67.9 2.0e-178 622.1
Csa01g00618 CCT,ECH 37 434 COBRA Gene Family AT5G60920 60.9 3.2e-152 535.0
Csa03g01928 . 1 348 COBRA Gene Family AT5G60920 54.8 1.7e-113 406.4
Csa01g00341 . 22 451 COBRA Gene Family AT3G02210 73.5 1.8e-204 708.8
Csa04g01018 . 14 453 COBRA Gene Family AT3G02210 73.0 5.4e-201 697.2
Csa04g01017 . 5 429 COBRA Gene Family AT3G02210 66.6 1.2e-179 626.3
Csa01g00340 CCT,ECH 27 433 COBRA Gene Family AT3G02210 68.0 2.9e-178 621.7
Csa01g00618 CCT,ECH 15 422 COBRA Gene Family AT3G02210 60.3 7.6e-155 543.9
Csa03g01928 . 1 356 COBRA Gene Family AT3G02210 54.0 2.5e-113 406.0
Csa01g00341 . 21 446 COBRA Gene Family AT3G29810 74.5 4.0e-201 697.6
Csa04g01018 . 29 448 COBRA Gene Family AT3G29810 72.4 1.8e-193 672.2
Csa04g01017 . 14 410 COBRA Gene Family AT3G29810 67.5 8.5e-175 610.1
Csa01g00340 CCT,ECH 38 435 COBRA Gene Family AT3G29810 67.1 1.1e-174 609.8
Csa01g00618 CCT,ECH 14 415 COBRA Gene Family AT3G29810 59.2 2.5e-150 528.9
Csa03g01928 . 1 352 COBRA Gene Family AT3G29810 54.2 3.5e-112 402.1
Csa01g00340 CCT,ECH 32 363 COBRA Gene Family AT5G15630 83.7 5.7e-179 623.6
Csa04g01017 . 9 339 COBRA Gene Family AT5G15630 81.9 4.2e-174 607.4
Csa01g00341 . 31 361 COBRA Gene Family AT5G15630 73.5 6.6e-151 530.4
Csa04g01018 . 29 358 COBRA Gene Family AT5G15630 68.5 4.6e-144 507.7
Csa01g00618 CCT,ECH 16 343 COBRA Gene Family AT5G15630 62.5 1.2e-131 466.5
Csa03g01928 . 1 264 COBRA Gene Family AT5G15630 50.2 1.3e-74 276.9
Csa01g00341 . 21 224 COBRA Gene Family AT5G60950 57.4 2.2e-64 242.3
Csa04g01018 . 27 220 COBRA Gene Family AT5G60950 60.0 1.4e-63 239.6
Csa04g01017 . 8 207 COBRA Gene Family AT5G60950 55.2 3.6e-59 224.9
Csa01g00340 CCT,ECH 51 231 COBRA Gene Family AT5G60950 57.5 1.9e-57 219.2
Csa01g00618 CCT,ECH 33 215 COBRA Gene Family AT5G60950 52.5 1.4e-47 186.4
Csa04g01018 . 25 427 COBRA Gene Family AT1G09790 53.4 9.5e-134 473.8
Csa01g00340 CCT,ECH 41 434 COBRA Gene Family AT1G09790 53.1 2.3e-132 469.2
Csa01g00341 . 32 432 COBRA Gene Family AT1G09790 53.6 4.0e-132 468.4
Csa04g01017 . 19 410 COBRA Gene Family AT1G09790 51.9 6.0e-128 454.5
Csa03g01928 . 1 338 COBRA Gene Family AT1G09790 61.5 7.3e-126 447.6
Csa03g01498 . 35 643 COBRA Gene Family AT4G16120 67.2 2.9e-256 881.3
Csa03g00533 . 56 669 COBRA Gene Family AT4G16120 52.8 5.5e-202 701.0
Csa03g02318 . 16 569 COBRA Gene Family AT4G16120 54.9 1.0e-195 680.2
Csa03g01498 . 28 635 COBRA Gene Family AT3G16860 64.3 9.1e-242 833.2
Csa03g00533 . 60 661 COBRA Gene Family AT3G16860 52.0 3.0e-192 668.7
Csa03g02318 . 8 581 COBRA Gene Family AT3G16860 52.2 3.3e-183 638.6
Csa03g01498 . 7 630 COBRA Gene Family AT5G49270 62.2 3.0e-240 828.2
Csa03g00533 . 60 672 COBRA Gene Family AT5G49270 50.7 5.5e-194 674.5
Csa03g02318 . 16 596 COBRA Gene Family AT5G49270 51.7 3.2e-186 648.7
Csa03g00533 . 56 676 COBRA Gene Family AT3G20580 63.0 1.0e-248 856.3
Csa03g02318 . 16 599 COBRA Gene Family AT3G20580 61.3 4.5e-228 787.7
Csa03g01498 . 28 627 COBRA Gene Family AT3G20580 54.4 1.0e-203 706.8
Csa03g00533 . 59 677 COBRA Gene Family AT4G27110 62.8 2.4e-242 835.1
Csa03g02318 . 16 597 COBRA Gene Family AT4G27110 61.0 3.6e-217 751.5
Csa03g01498 . 6 645 COBRA Gene Family AT4G27110 51.8 5.2e-200 694.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00618 Csa_Chr01 FPKM 1.137432 0.89302 38.041691 38.340267 33.616047 34.18568 33.022583 0.977099 0.599337 1.02091