Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00618 ATGAATTCAGACAAACATAAACTCCTAACTTTCTCAGCCACTTCCTTTTTATTTCTGATTTCTCTAGCAGCGGCATTTGACTTCCTCGACCCGAATGGAAAAATCGAAATCAAATGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACAGTGACTATAACAAACTCTCAGACATACCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGGGAGAGGTCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCAGTTCCACGTTTACAGGAACTATACCACACAGTTGCAAAAGAGATCCATCGGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAGACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCATTCCGGTAGTTCGAATAAGACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACATGTAGCCAGGCAAAGATTGTGCCACCATCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCTCTTACTCACAGTTTCTTGCTTCTCAAACGCCAACCTGTTGTGTCTCCATGTCATCTTTCTATAACTCGAAAGTTACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGAAGAAACGGCATGTATCCTGACGGAATCAGATCTTCAAAGCATAACGGAATTGAATGCACCTACAAATGACAGTGCTCCATTGGTGCAGTGCACGACACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTTAAGATAACCATCAGTAATCTCAACTATCGACTTAACTATTCACAATGGACTCTTGTTGTTGAGCACCCCAATTTCAACAACACGGTGGAAGTTTATAGCTTTGTTTATAAGCCACTCACCCCCTTCATCTCTAAGAACGACACTGCTCTGTTTCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATTATTTTTCAAAAGGATTCAACATTTACATTGGAACATGGATGGGCTTTCCCTCAAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATCTCCTGATTCTTACCCATTTCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTTCTTCCCATATTCTTTACATTGTTATCTTAG 1323 42.63 MNSDKHKLLTFSATSFLFLISLAAAFDFLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKGEVIWSMQGAEATDQGDCSSSTFTGTIPHSCKRDPSVVDLLPGAPYNRQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASQTPTCCVSMSSFYNSKVTPCKACACGCQEETACILTESDLQSITELNAPTNDSAPLVQCTTHNCPIQVHWHVKENYKGYWRVKITISNLNYRLNYSQWTLVVEHPNFNNTVEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVHSEIIFQKDSTFTLEHGWAFPQKVYFDGDECVMPSPDSYPFLPNLANANPILLSTLACIFLPIFFTLLS* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3946497 3948404 - CsaV3_1G006180.1 Csa01g00618 515115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00618 440 Pfam COBRA-like protein 49 214 IPR006918 GO:0010215|GO:0031225
Csa01g00618 440 PANTHER COBRA-LIKE PROTEIN 8 435 - -
Csa01g00618 440 PIRSF COBRA 3 440 IPR006918 GO:0010215|GO:0031225
Csa01g00618 440 PANTHER PROTEIN COBRA 8 435 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00618 Csa01g00340 CCT
Csa01g00618 Csa01g00340 ECH
Csa01g00340 Csa01g00618 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00618 Csa-Chr1:3946497 Csa04g01018 Csa-Chr4:7964202 0 dispersed
Csa03g00533 Csa-Chr3:4452146 Csa01g00618 Csa-Chr1:3946497 1.97E-32 transposed
Csa03g01498 Csa-Chr3:11114152 Csa01g00618 Csa-Chr1:3946497 5.94E-39 transposed
Csa03g02318 Csa-Chr3:20725839 Csa01g00618 Csa-Chr1:3946497 5.99E-38 transposed
Csa01g00340 Csa-Chr1:2128397 Csa01g00618 Csa-Chr1:3946497 0 wgd
Csa01g00618 Csa-Chr1:3946497 Csa04g01017 Csa-Chr4:7962730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00618 - - csv:101203708 892.108