Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00620 ATGGAGTCTTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGATGATTCTGTCAGTGGTGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTGCCCACCTCTCATCCACTTCATGGAGAAGAAGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTTGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCGACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGTTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCATAATGAGCGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGCAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTGTAAAAGTTGAGGGGAAGAGTGATTATAATTCTATATCTGCAACTTCACTGAGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTCGAAGTGCAGATTCCTCCTTTCCAAGAAAATGGAACTAGTACAGCACCTACAGTAAACATGCTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCAAACTACCTTATCAAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATCATGTCCGAGAGTCAATCAAATTATAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAAGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTTCCATACCGACTTGTGGAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCAACTATTGACTTGCTTCAACTTTCATCACAACTCCAGCGAGTGGAACATCAGAGGCACTCCATGCAGGACTCTGCATAG 1647 42.56 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSGVLNTKTDGGRNLNLVLPTSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRVKVEGKSDYNSISATSLSNRHLNVKSPLLPYDFEVQIPPFQENGTSTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHQTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGITSKFASGMSEAQMGSIPTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQDSA* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3954235 3961284 - CsaV3_1G006200.1 Csa01g00620 515117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00620 548 Pfam SBP domain 177 250 IPR004333 GO:0003677
Csa01g00620 548 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Csa01g00620 548 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Csa01g00620 548 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 546 IPR044817 GO:0003677
Csa01g00620 548 MobiDBLite consensus disorder prediction 147 165 - -
Csa01g00620 548 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 546 - -
Csa01g00620 548 MobiDBLite consensus disorder prediction 146 165 - -
Csa01g00620 548 MobiDBLite consensus disorder prediction 1 22 - -
Csa01g00620 548 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00620 - - - csv:101206747 1085.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00620 Csa-Chr1:3954235 Csa06g00818 Csa-Chr6:6551819 8.30E-40 dispersed
Csa03g02851 Csa-Chr3:27286153 Csa01g00620 Csa-Chr1:3954235 4.42E-32 transposed
Csa01g00338 Csa-Chr1:2115257 Csa01g00620 Csa-Chr1:3954235 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50670 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30662 PF03110 SBP 3.00E-31 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00620 Csa_Chr01 FPKM 19.305593 22.41433 22.27338 22.121124 80.83709 79.453262 85.198051 32.566864 30.382978 30.493406