Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00620 ATGGAGTCTTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGATGATTCTGTCAGTGGTGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTGCCCACCTCTCATCCACTTCATGGAGAAGAAGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTTGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCGACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGTTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCATAATGAGCGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGCAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTGTAAAAGTTGAGGGGAAGAGTGATTATAATTCTATATCTGCAACTTCACTGAGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTCGAAGTGCAGATTCCTCCTTTCCAAGAAAATGGAACTAGTACAGCACCTACAGTAAACATGCTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCAAACTACCTTATCAAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATCATGTCCGAGAGTCAATCAAATTATAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAAGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTTCCATACCGACTTGTGGAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCAACTATTGACTTGCTTCAACTTTCATCACAACTCCAGCGAGTGGAACATCAGAGGCACTCCATGCAGGACTCTGCATAG 1647 42.56 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSGVLNTKTDGGRNLNLVLPTSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRVKVEGKSDYNSISATSLSNRHLNVKSPLLPYDFEVQIPPFQENGTSTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHQTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGITSKFASGMSEAQMGSIPTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQDSA* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3954235 3961284 - CsaV3_1G006200.1 Csa01g00620 515117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00620 548 Pfam SBP domain 177 250 IPR004333 GO:0003677
Csa01g00620 548 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Csa01g00620 548 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Csa01g00620 548 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 546 IPR044817 GO:0003677
Csa01g00620 548 MobiDBLite consensus disorder prediction 147 165 - -
Csa01g00620 548 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 546 - -
Csa01g00620 548 MobiDBLite consensus disorder prediction 146 165 - -
Csa01g00620 548 MobiDBLite consensus disorder prediction 1 22 - -
Csa01g00620 548 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00620 Csa-Chr1:3954235 Csa06g00818 Csa-Chr6:6551819 8.30E-40 dispersed
Csa03g02851 Csa-Chr3:27286153 Csa01g00620 Csa-Chr1:3954235 4.42E-32 transposed
Csa01g00338 Csa-Chr1:2115257 Csa01g00620 Csa-Chr1:3954235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30662 PF03110 SBP 3.00E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00620 - - csv:101206747 1085.86