Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00621 | ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCAAAGAGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGTAAACTCTTTGAGTTTTGTAGTGGCTCTAGCATGACTAAAACGTTGGAGAAATATCGAAGATGTAGTTACGGTATACCGAATGCTACTCATCAAGTAAGTGTGAATCAACCACAGAGCTTTGATGACTATCTGAATCTAAAAGCCACAGTTGAATTCATGCAACAATCTCAGAGAAACCTTTTGGGAGAAGATTTAGGTCCACTGAATGCCAAAGAACTTGAGCAACTTGAACATCAACTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGAACAACTTACAGAACTTCAACGCAAGGAACAAATGCTTGTCGAGGACAATCGAGGATTAAAAAAGAAGCTGGAAGAAAGCAGTGCGCAAGTGGCGGTGGCAGCAGCTGGGGCATGGGGGTGGGAAGATGGCGCCGGAGGGCACAACATGGAGTATCCCAGCCGTGGTGTTGCTTCACAATCAGATGCCTTTTTCCACCCCATAGTTCAACCCACTCCCACTTTACAAATTGGGTACAGTTCTATTGGCTCAATGGGAATGAATCATATTGGATCTCCATCCCAAAATGCCAATAACAATGCATTTCACCTTGGCTGGATGATTTAA | 771 | 42.8 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGIPNATHQVSVNQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTQSLLEQLTELQRKEQMLVEDNRGLKKKLEESSAQVAVAAAGAWGWEDGAGGHNMEYPSRGVASQSDAFFHPIVQPTPTLQIGYSSIGSMGMNHIGSPSQNANNNAFHLGWMI* | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3970082 | 3974493 | + | CsaV3_1G006210.1 | Csa01g00621 | 515118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00621 | 256 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa01g00621 | 256 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | Coils | Coil | 151 | 171 | - | - | |
Csa01g00621 | 256 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Csa01g00621 | 256 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 241 | - | - | |
Csa01g00621 | 256 | Pfam | K-box region | 91 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa01g00621 | 256 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 241 | - | - | |
Csa01g00621 | 256 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00621 | 256 | Coils | Coil | 122 | 145 | - | - | |
Csa01g00621 | 256 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00621 | Csa-Chr1:3970082 | Csa04g01009 | Csa-Chr4:7881189 | 2.42E-96 | dispersed | |
Csa01g00975 | Csa-Chr1:6027236 | Csa01g00621 | Csa-Chr1:3970082 | 9.10E-48 | dispersed | |
Csa06g00821 | Csa-Chr6:6588388 | Csa01g00621 | Csa-Chr1:3970082 | 5.85E-29 | dispersed | |
Csa01g00621 | Csa-Chr1:3970082 | Csa01g00622 | Csa-Chr1:3977607 | 1.86E-50 | tandem | |
Csa01g00621 | Csa-Chr1:3970082 | Csa04g01008 | Csa-Chr4:7827623 | 5.12E-55 | wgd | |
Csa01g00621 | Csa-Chr1:3970082 | Csa06g02092 | Csa-Chr6:18659488 | 5.53E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30663 | PF01486 | K-box | 6.00E-25 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00621 | K09264 | - | csv:101204197 | 475.322 |