Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00621 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCAAAGAGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGTAAACTCTTTGAGTTTTGTAGTGGCTCTAGCATGACTAAAACGTTGGAGAAATATCGAAGATGTAGTTACGGTATACCGAATGCTACTCATCAAGTAAGTGTGAATCAACCACAGAGCTTTGATGACTATCTGAATCTAAAAGCCACAGTTGAATTCATGCAACAATCTCAGAGAAACCTTTTGGGAGAAGATTTAGGTCCACTGAATGCCAAAGAACTTGAGCAACTTGAACATCAACTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGAACAACTTACAGAACTTCAACGCAAGGAACAAATGCTTGTCGAGGACAATCGAGGATTAAAAAAGAAGCTGGAAGAAAGCAGTGCGCAAGTGGCGGTGGCAGCAGCTGGGGCATGGGGGTGGGAAGATGGCGCCGGAGGGCACAACATGGAGTATCCCAGCCGTGGTGTTGCTTCACAATCAGATGCCTTTTTCCACCCCATAGTTCAACCCACTCCCACTTTACAAATTGGGTACAGTTCTATTGGCTCAATGGGAATGAATCATATTGGATCTCCATCCCAAAATGCCAATAACAATGCATTTCACCTTGGCTGGATGATTTAA 771 42.8 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGIPNATHQVSVNQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTQSLLEQLTELQRKEQMLVEDNRGLKKKLEESSAQVAVAAAGAWGWEDGAGGHNMEYPSRGVASQSDAFFHPIVQPTPTLQIGYSSIGSMGMNHIGSPSQNANNNAFHLGWMI* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3970082 3974493 + CsaV3_1G006210.1 Csa01g00621 515118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00621 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa01g00621 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa01g00621 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa01g00621 256 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Csa01g00621 256 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa01g00621 256 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Csa01g00621 256 Coils Coil 151 171 - -
Csa01g00621 256 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa01g00621 256 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 241 - -
Csa01g00621 256 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa01g00621 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa01g00621 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa01g00621 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 241 - -
Csa01g00621 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa01g00621 256 Coils Coil 122 145 - -
Csa01g00621 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00621 Csa-Chr1:3970082 Csa04g01009 Csa-Chr4:7881189 2.42E-96 dispersed
Csa01g00975 Csa-Chr1:6027236 Csa01g00621 Csa-Chr1:3970082 9.10E-48 dispersed
Csa06g00821 Csa-Chr6:6588388 Csa01g00621 Csa-Chr1:3970082 5.85E-29 dispersed
Csa01g00621 Csa-Chr1:3970082 Csa01g00622 Csa-Chr1:3977607 1.86E-50 tandem
Csa01g00621 Csa-Chr1:3970082 Csa04g01008 Csa-Chr4:7827623 5.12E-55 wgd
Csa01g00621 Csa-Chr1:3970082 Csa06g02092 Csa-Chr6:18659488 5.53E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30663 PF01486 K-box 6.00E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00621 K09264 - csv:101204197 475.322