Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00622 ATGGGGAGAGGGAGAGTGCAATTGAAGAGAATAGAGAACAAAATTATTAGACAAGTGACTTTCTCTAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCCACCAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTGAAATGAATATGAGTCAGAATTTGAATTTTCATTTCAGCATGGAGAAAATTCTTGAGCGTTATGAAAGGTACTCATATGCAGAGAGGAGACTTGTTGCAAATGATAGCCAACCAAATGGAAATTGGACACTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTTTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTCGACTCATTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTACAGAGCTAAAGAAAAAGGGCAAAGTACTACAAGAGCATAATAACATCTTAGGCAAAAAGATAAAGGAGAAGGAGAAATCACGAGCTCACAATCCACAAATGGAGCAGCAGCAGCACCAGAATAGTAATGTCATTGAATCTTCTCCACTTCTTCTACCTCAGCCATTTCAATCTCTTAGCATGAGTTGTCCTTATCCAACCCACGGCCTCGAAGAGAACGAGTCCGCTCCCAATCACGAAAGATCCGATACCCTCCTTCCGCCGTGGATGCTCCGCCACCACCTTGGTGACTAA 786 40.84 MGRGRVQLKRIENKIIRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCEMNMSQNLNFHFSMEKILERYERYSYAERRLVANDSQPNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESITELKKKGKVLQEHNNILGKKIKEKEKSRAHNPQMEQQQHQNSNVIESSPLLLPQPFQSLSMSCPYPTHGLEENESAPNHERSDTLLPPWMLRHHLGD* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3977607 3984044 + CsaV3_1G006220.1 Csa01g00622 515119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00622 261 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa01g00622 261 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Csa01g00622 261 CDD MADS_MEF2_like 2 89 IPR033896 GO:0000977|GO:0045944
Csa01g00622 261 Coils Coil 135 158 - -
Csa01g00622 261 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa01g00622 261 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa01g00622 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Csa01g00622 261 Pfam K-box region 99 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa01g00622 261 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 231 - -
Csa01g00622 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa01g00622 261 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Csa01g00622 261 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa01g00622 261 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa01g00622 261 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa01g00622 261 MobiDBLite consensus disorder prediction 226 248 - -
Csa01g00622 261 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00622 Csa-Chr1:3977607 Csa04g01008 Csa-Chr4:7827623 3.92E-84 dispersed
Csa06g03905 Csa-Chr6:30881273 Csa01g00622 Csa-Chr1:3977607 9.76E-39 dispersed
Csa01g00621 Csa-Chr1:3970082 Csa01g00622 Csa-Chr1:3977607 1.86E-50 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30664 PF01486 K-box 1.70E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00622 K09264 - csv:101207225 509.99