Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00622 | ATGGGGAGAGGGAGAGTGCAATTGAAGAGAATAGAGAACAAAATTATTAGACAAGTGACTTTCTCTAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCCACCAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTGAAATGAATATGAGTCAGAATTTGAATTTTCATTTCAGCATGGAGAAAATTCTTGAGCGTTATGAAAGGTACTCATATGCAGAGAGGAGACTTGTTGCAAATGATAGCCAACCAAATGGAAATTGGACACTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTTTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTCGACTCATTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTACAGAGCTAAAGAAAAAGGGCAAAGTACTACAAGAGCATAATAACATCTTAGGCAAAAAGATAAAGGAGAAGGAGAAATCACGAGCTCACAATCCACAAATGGAGCAGCAGCAGCACCAGAATAGTAATGTCATTGAATCTTCTCCACTTCTTCTACCTCAGCCATTTCAATCTCTTAGCATGAGTTGTCCTTATCCAACCCACGGCCTCGAAGAGAACGAGTCCGCTCCCAATCACGAAAGATCCGATACCCTCCTTCCGCCGTGGATGCTCCGCCACCACCTTGGTGACTAA | 786 | 40.84 | MGRGRVQLKRIENKIIRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCEMNMSQNLNFHFSMEKILERYERYSYAERRLVANDSQPNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESITELKKKGKVLQEHNNILGKKIKEKEKSRAHNPQMEQQQHQNSNVIESSPLLLPQPFQSLSMSCPYPTHGLEENESAPNHERSDTLLPPWMLRHHLGD* | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3977607 | 3984044 | + | CsaV3_1G006220.1 | Csa01g00622 | 515119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00622 | 261 | ProSiteProfiles | K-box domain profile. | 101 | 191 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa01g00622 | 261 | SUPERFAMILY | SRF-like | 2 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | CDD | MADS_MEF2_like | 2 | 89 | IPR033896 | GO:0000977|GO:0045944 | |
Csa01g00622 | 261 | Coils | Coil | 135 | 158 | - | - | |
Csa01g00622 | 261 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 231 | - | - | |
Csa01g00622 | 261 | Pfam | K-box region | 99 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa01g00622 | 261 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 231 | - | - | |
Csa01g00622 | 261 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | Gene3D | - | 14 | 102 | IPR036879 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Csa01g00622 | 261 | MobiDBLite | consensus disorder prediction | 226 | 248 | - | - | |
Csa01g00622 | 261 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00622 | Csa-Chr1:3977607 | Csa04g01008 | Csa-Chr4:7827623 | 3.92E-84 | dispersed | |
Csa06g03905 | Csa-Chr6:30881273 | Csa01g00622 | Csa-Chr1:3977607 | 9.76E-39 | dispersed | |
Csa01g00621 | Csa-Chr1:3970082 | Csa01g00622 | Csa-Chr1:3977607 | 1.86E-50 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30664 | PF01486 | K-box | 1.70E-29 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00622 | K09264 | - | csv:101207225 | 509.99 |