Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00624 ATGGCGGCGACAAAATCCCAGAAATTTTCGGCGGATTTTGTGATGGGTGGAGTTGCTGCGATTGTGGCCAAAACTGCAGCCGCACCCATTGAAAGGGTCAAGCTTTTGTTGCAGAATCAGGGGGAGATGATAAAGAGAGGCCAACTTAAGAACCCATATCTTGGAATTCATCACTGTTTCAGAACTGTTCTCAAAGAAGAAGGCTTTTTGTCTCTATGGAGGGGAAATCAGGTTAATGTTATTCGGTATTTCCCTACTCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAAACGAAATTTGGTCGCTCGAAAGAGAAGGATGGATACATCAAGTGGTTTGCTGGAAATGTGGCATCAGGAAGTGCTGCTGGAGCAACTACATCTTTGTTTCTATATCATTTGGATTATGCACGCACTCGGCTTGGCACCGATGCAAAGGGCGGTGGCGGTAACAGTCAGCATCAGTTCAAAGGGATCTTTGATGTGTACAGAAAAACATTGTCAAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGTGTTTCGATCATTGGAATTACTCTGTACAGGGGCATGTACTTTGGGATTTATGACACTTTGAAACCTCTTGTTCTGGTCGGACAGTTTGAGGGGAACTTTTTTGCTAGTTTCTTACTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCGGGACAAACCTTGAAGTATCGTAGTGGTTTGCATGCATTTTCTGAGATCATTCGCCATGAGGGCATTGCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCTGGAGCTGGCGTTCTTGCAGGTTATGATCAATTGCACCGAATCGCATGTAGAAATGGTTATTCCTTTGGAGGGCAACATCAAATAGCTTCAAAATGA 948 43.88 MAATKSQKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGQLKNPYLGIHHCFRTVLKEEGFLSLWRGNQVNVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKGGGGNSQHQFKGIFDVYRKTLSSDGIVGLYRGFSVSIIGITLYRGMYFGIYDTLKPLVLVGQFEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYRSGLHAFSEIIRHEGIAALFRGVTANMLVGVAGAGVLAGYDQLHRIACRNGYSFGGQHQIASK* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3987222 3989827 - CsaV3_1G006240.1 Csa01g00624 515121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00624 315 Pfam Mitochondrial carrier protein 113 205 IPR018108 -
Csa01g00624 315 Pfam Mitochondrial carrier protein 7 103 IPR018108 -
Csa01g00624 315 Pfam Mitochondrial carrier protein 213 298 IPR018108 -
Csa01g00624 315 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 4 309 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa01g00624 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 100 IPR018108 -
Csa01g00624 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 204 IPR018108 -
Csa01g00624 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Csa01g00624 315 PRINTS Adenine nucleotide translocator signature 9 21 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa01g00624 315 PRINTS Adenine nucleotide translocator signature 53 74 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa01g00624 315 PRINTS Adenine nucleotide translocator signature 86 98 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa01g00624 315 PRINTS Adenine nucleotide translocator signature 112 125 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa01g00624 315 PRINTS Adenine nucleotide translocator signature 217 233 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa01g00624 315 Gene3D Mitochondrial carrier domain 10 304 IPR023395 -
Csa01g00624 315 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 4 309 - -
Csa01g00624 315 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085
Csa01g00624 315 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085
Csa01g00624 315 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085
Csa01g00624 315 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Csa01g00624 315 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Csa01g00624 315 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
Csa01g00624 315 SUPERFAMILY Mitochondrial carrier 7 295 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00624 Csa-Chr1:3987222 Csa02g01936 Csa-Chr2:18165384 1.59E-131 dispersed
Csa01g00624 Csa-Chr1:3987222 Csa03g03076 Csa-Chr3:28937338 3.39E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00624 K05863 - csv:101207715 602.438