Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00624 | ATGGCGGCGACAAAATCCCAGAAATTTTCGGCGGATTTTGTGATGGGTGGAGTTGCTGCGATTGTGGCCAAAACTGCAGCCGCACCCATTGAAAGGGTCAAGCTTTTGTTGCAGAATCAGGGGGAGATGATAAAGAGAGGCCAACTTAAGAACCCATATCTTGGAATTCATCACTGTTTCAGAACTGTTCTCAAAGAAGAAGGCTTTTTGTCTCTATGGAGGGGAAATCAGGTTAATGTTATTCGGTATTTCCCTACTCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAAACGAAATTTGGTCGCTCGAAAGAGAAGGATGGATACATCAAGTGGTTTGCTGGAAATGTGGCATCAGGAAGTGCTGCTGGAGCAACTACATCTTTGTTTCTATATCATTTGGATTATGCACGCACTCGGCTTGGCACCGATGCAAAGGGCGGTGGCGGTAACAGTCAGCATCAGTTCAAAGGGATCTTTGATGTGTACAGAAAAACATTGTCAAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGTGTTTCGATCATTGGAATTACTCTGTACAGGGGCATGTACTTTGGGATTTATGACACTTTGAAACCTCTTGTTCTGGTCGGACAGTTTGAGGGGAACTTTTTTGCTAGTTTCTTACTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCGGGACAAACCTTGAAGTATCGTAGTGGTTTGCATGCATTTTCTGAGATCATTCGCCATGAGGGCATTGCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCTGGAGCTGGCGTTCTTGCAGGTTATGATCAATTGCACCGAATCGCATGTAGAAATGGTTATTCCTTTGGAGGGCAACATCAAATAGCTTCAAAATGA | 948 | 43.88 | MAATKSQKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGQLKNPYLGIHHCFRTVLKEEGFLSLWRGNQVNVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKGGGGNSQHQFKGIFDVYRKTLSSDGIVGLYRGFSVSIIGITLYRGMYFGIYDTLKPLVLVGQFEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYRSGLHAFSEIIRHEGIAALFRGVTANMLVGVAGAGVLAGYDQLHRIACRNGYSFGGQHQIASK* | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3987222 | 3989827 | - | CsaV3_1G006240.1 | Csa01g00624 | 515121 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00624 | 315 | Pfam | Mitochondrial carrier protein | 113 | 205 | IPR018108 | - | |
Csa01g00624 | 315 | Pfam | Mitochondrial carrier protein | 7 | 103 | IPR018108 | - | |
Csa01g00624 | 315 | Pfam | Mitochondrial carrier protein | 213 | 298 | IPR018108 | - | |
Csa01g00624 | 315 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 4 | 309 | IPR002113 | GO:0005471|GO:0005743|GO:0140021|GO:1990544 | |
Csa01g00624 | 315 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 7 | 100 | IPR018108 | - | |
Csa01g00624 | 315 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 112 | 204 | IPR018108 | - | |
Csa01g00624 | 315 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 212 | 298 | IPR018108 | - | |
Csa01g00624 | 315 | PRINTS | Adenine nucleotide translocator signature | 9 | 21 | IPR002113 | GO:0005471|GO:0005743|GO:0140021|GO:1990544 | |
Csa01g00624 | 315 | PRINTS | Adenine nucleotide translocator signature | 53 | 74 | IPR002113 | GO:0005471|GO:0005743|GO:0140021|GO:1990544 | |
Csa01g00624 | 315 | PRINTS | Adenine nucleotide translocator signature | 86 | 98 | IPR002113 | GO:0005471|GO:0005743|GO:0140021|GO:1990544 | |
Csa01g00624 | 315 | PRINTS | Adenine nucleotide translocator signature | 112 | 125 | IPR002113 | GO:0005471|GO:0005743|GO:0140021|GO:1990544 | |
Csa01g00624 | 315 | PRINTS | Adenine nucleotide translocator signature | 217 | 233 | IPR002113 | GO:0005471|GO:0005743|GO:0140021|GO:1990544 | |
Csa01g00624 | 315 | Gene3D | Mitochondrial carrier domain | 10 | 304 | IPR023395 | - | |
Csa01g00624 | 315 | PANTHER | ADP,ATP CARRIER PROTEIN ER-ANT1 | 4 | 309 | - | - | |
Csa01g00624 | 315 | PRINTS | Mitochondrial carrier protein signature | 12 | 25 | IPR002067 | GO:0055085 | |
Csa01g00624 | 315 | PRINTS | Mitochondrial carrier protein signature | 25 | 39 | IPR002067 | GO:0055085 | |
Csa01g00624 | 315 | PRINTS | Mitochondrial carrier protein signature | 75 | 95 | IPR002067 | GO:0055085 | |
Csa01g00624 | 315 | PRINTS | Mitochondrial carrier protein signature | 127 | 145 | IPR002067 | GO:0055085 | |
Csa01g00624 | 315 | PRINTS | Mitochondrial carrier protein signature | 177 | 195 | IPR002067 | GO:0055085 | |
Csa01g00624 | 315 | PRINTS | Mitochondrial carrier protein signature | 221 | 243 | IPR002067 | GO:0055085 | |
Csa01g00624 | 315 | SUPERFAMILY | Mitochondrial carrier | 7 | 295 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00624 | Csa-Chr1:3987222 | Csa02g01936 | Csa-Chr2:18165384 | 1.59E-131 | dispersed | |
Csa01g00624 | Csa-Chr1:3987222 | Csa03g03076 | Csa-Chr3:28937338 | 3.39E-30 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00624 | K05863 | - | csv:101207715 | 602.438 |