Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00628 ATGGAGCTTCCTCAACCTCCTCGTCCTCTTGGAACCGAAGGACGGAAACCAACGCATGACTTTCTATCACTCTATGGTCATTCAACTGCTCTTCAACAAGATCCATCCCAGTCCTTTCAAGGGGGTTTCCTTAAAACGCATGATTTTCTCCGGCCGTTGGAACGGACTGGGAAGACATGCGCCAAGGAAGAGAAAACAATCAATGTATCCACTGTGGAACGAGCAGCGCCAACCTTGGGAACTCAAGCACATAATTCTGCTGCCGAGCGTTTATTACCGGGTGGAATTGGGACTTACAGTATTAGCCACATTTCTTATTTTAACCAGAGGGTTCCAAAGCCAGAAGGGTCGGTATTCCCAGTGCCTCAGGCCAGTAATACTGATAAAAGTGATGACAACTCCCGTTGTAGCTCTTTGTCTGGAAATGGTTTCACGCTGTGGGAAGAATCTGCTGTTAAAAAGGGAAAGACAAGGAAGGAGAATCTGGGTGAAAAGCCCGCCTTAAAGGAATCACCGGCAAAGATTGAGCAATGGACCGTTACAACAGAGCGGCCAATGCAATCGTCGTCAAGCAACCATCGCAGTAGCTTCAGCTCTCTCTCCCCCTCTCAGCCTTCAGGGCAGCAGAGCCGAAGCTTCGGTGAGATGTTAAAGTCCACAGTCAATGTTTCCTCCATGGAAGAGGAACTAGACGACGACAAAGCATTTGTTATTAAGAAGGAATCATCACCATCCACTGCCTATAAAGGTGACTTGAAGATTAATATCTGTGGAAAAAGCTCTGATCAGAAGGCTAACACGCCGAGATCCAAACATTCTGCAACAGAACAGCGTCGAAGGAGCAAAATTAATGATAGATTTCAGAAGCTGAGAGAACTAATTCCCCGTAGTGATCAGAAGAGAGACAAGGCATCGTTCTTATTAGAGGTTATCGAGTACATTCAATTTTTACAAGAAAAGGTTCGCAAGTATGAAAGCTCACCACCGCAAGGATGGTATCATGAACCAGCGAAATTGATCCCCTGTAGAAACAATTGCAATCCAGCACAATGTTACATCGATCAATCTCAAATAGCAAAGAGCGGCCCTGTGTTTATATTTGCTGGATCTGATGAGAAAAATATGTGTCACTCCCCTGCATTTCCTAGGTGCTCGCACAACCCAGTAGAATCTGAAGTCAGTACTTCCACCACCTTCCGAGAAGCGGATCAACACCCTGGAACAAATAACAAAACGTGTTATCCAATGTTGGACCCACGCCATTTCACACCTGTCATAAGTGAAGGTGCAAAAACTAGACTCCATTCTCAAGTAGGACATAATGCAGACAATAAACCATGTGAAATACAACCACTATCGTGCGAGATGAGATCATGTACTACCAATATTGTTGATGGCAATAATAAGCTGAAAGAACCTGAGCAGAGGATTGATGGTGGTAGAATTAGCATCTCAGGTGCATATTCTCAAGGGTTGTTAAAAATTCTCACACAAGCGCTACAAAGTTCTGGAGTGGATATGTCACAGGCCAGCGTTGCGGTGCAAATAGAACTTGGAAAGAGAACGAATTACAGAGAGATCGTCCCTTCTCCTATTGTGGACGATTCAGCTCGCCCAAGTGAGAGAGCGAGCGTTGGTACAAGAGTTATAGCTGGAGAGAATATGGAGCAGGCATTAAGAAAGAAGCAAAAGACATGA 1698 44.94 MELPQPPRPLGTEGRKPTHDFLSLYGHSTALQQDPSQSFQGGFLKTHDFLRPLERTGKTCAKEEKTINVSTVERAAPTLGTQAHNSAAERLLPGGIGTYSISHISYFNQRVPKPEGSVFPVPQASNTDKSDDNSRCSSLSGNGFTLWEESAVKKGKTRKENLGEKPALKESPAKIEQWTVTTERPMQSSSSNHRSSFSSLSPSQPSGQQSRSFGEMLKSTVNVSSMEEELDDDKAFVIKKESSPSTAYKGDLKINICGKSSDQKANTPRSKHSATEQRRRSKINDRFQKLRELIPRSDQKRDKASFLLEVIEYIQFLQEKVRKYESSPPQGWYHEPAKLIPCRNNCNPAQCYIDQSQIAKSGPVFIFAGSDEKNMCHSPAFPRCSHNPVESEVSTSTTFREADQHPGTNNKTCYPMLDPRHFTPVISEGAKTRLHSQVGHNADNKPCEIQPLSCEMRSCTTNIVDGNNKLKEPEQRIDGGRISISGAYSQGLLKILTQALQSSGVDMSQASVAVQIELGKRTNYREIVPSPIVDDSARPSERASVGTRVIAGENMEQALRKKQKT* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4002735 4008902 - CsaV3_1G006280.1 Csa01g00628 515125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00628 565 MobiDBLite consensus disorder prediction 115 140 - -
Csa01g00628 565 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 565 IPR044295 GO:0003700|GO:0006351|GO:0046983
Csa01g00628 565 CDD bHLH_AtBIM_like 266 343 - -
Csa01g00628 565 MobiDBLite consensus disorder prediction 258 284 - -
Csa01g00628 565 MobiDBLite consensus disorder prediction 153 212 - -
Csa01g00628 565 SMART finulus 273 323 IPR011598 GO:0046983
Csa01g00628 565 MobiDBLite consensus disorder prediction 532 565 - -
Csa01g00628 565 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g00628 565 MobiDBLite consensus disorder prediction 153 171 - -
Csa01g00628 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 326 IPR036638 GO:0046983
Csa01g00628 565 Pfam Helix-loop-helix DNA-binding domain 269 318 IPR011598 GO:0046983
Csa01g00628 565 MobiDBLite consensus disorder prediction 120 140 - -
Csa01g00628 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Csa01g00628 565 Gene3D - 264 330 IPR036638 GO:0046983
Csa01g00628 565 PANTHER TRANSCRIPTION FACTOR BIM1 1 565 - -
Csa01g00628 565 MobiDBLite consensus disorder prediction 175 212 - -
Csa01g00628 565 MobiDBLite consensus disorder prediction 265 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00628 - - - csv:101204688 1103.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00628 Csa01g00327 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00628 Csa-Chr1:4002735 Csa02g00267 Csa-Chr2:1833037 3.44E-08 dispersed
Csa01g00327 Csa-Chr1:2026829 Csa01g00628 Csa-Chr1:4002735 2.20E-166 wgd
Csa01g00628 Csa-Chr1:4002735 Csa04g01001 Csa-Chr4:7769516 6.93E-41 wgd
Csa01g00628 Csa-Chr1:4002735 Csa06g02106 Csa-Chr6:18737868 5.88E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g417 . . Bda06g00506 Bda15g00637 Bpe12g00510 . . Bma12g00955 Cmo13g01097 . Cma10g00277 Cma11g00233 Car10g00259 Car11g00210 Sed08g0307 Cpe20g00094 Cpe04g01439 Bhi02g00050 Tan09g1999 Cmetu02g0900 . Hepe09g0297 . . Cla06g01518 Cam06g1675 Cec06g1736 Cco06g1732 Clacu06g1640 Cmu06g1588 Cre06g2399 . . Cone13ag0021 Cone19ag0030 Lsi02g00145 Csa01g00628 Chy12g01472 Cme12g01914 . Blo15g00347 . . Bpe07g00745 . . . Sed01g2275 Cmo10g00294 Cmo11g00236 Cma13g01054 . Car13g00889 . . Cpe18g00723 Bhi08g01049 Tan05g2320 Cmetu12g0108 . . . . Cla04g01132 Cam04g1185 Cec01g1697 Cco01g1743 Clacu04g1212 Cmu04g1191 Cre01g1490 Lsi06g01384 Csa01g00327 Chy02g02415 Cme02g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006116 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 8 5 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30665 PF00010 HLH 5.20E-16 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00628 Csa_Chr01 FPKM 12.048841 12.279046 21.750141 24.876238 24.233974 17.216213 21.158476 24.186983 26.428808 32.945839