Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00634 ATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCTAAAGGACAAAGAAAAGGAGAAGAAGCTCTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCGGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTTGTTCGCAAAGCTGCTGAGTATAAGTGCTTGAAGCGGGGTGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGCCAAAAAGGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGAAATTCGTTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCTGGGTCGACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCCGAAGTATCAGAACTTACTAGCACTCTTTTTTGA 477 45.7 MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4041091 4042702 + CsaV3_1G006340.1 Csa01g00634 515131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00634 158 PRINTS Ribosomal protein L7A/RS6 family signature 53 67 IPR018492 -
Csa01g00634 158 PRINTS Ribosomal protein L7A/RS6 family signature 72 85 IPR018492 -
Csa01g00634 158 PRINTS Ribosomal protein L7A/RS6 family signature 88 98 IPR018492 -
Csa01g00634 158 PRINTS Ribosomal protein L7A/RS6 family signature 98 112 IPR018492 -
Csa01g00634 158 PANTHER - 2 156 - -
Csa01g00634 158 Gene3D - 18 154 IPR029064 -
Csa01g00634 158 PRINTS High mobility group-like nuclear protein signature 26 39 IPR002415 GO:0003723|GO:0005730
Csa01g00634 158 PRINTS High mobility group-like nuclear protein signature 39 54 IPR002415 GO:0003723|GO:0005730
Csa01g00634 158 PRINTS High mobility group-like nuclear protein signature 56 66 IPR002415 GO:0003723|GO:0005730
Csa01g00634 158 PRINTS High mobility group-like nuclear protein signature 100 112 IPR002415 GO:0003723|GO:0005730
Csa01g00634 158 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 156 - -
Csa01g00634 158 SUPERFAMILY L30e-like 19 131 IPR029064 -
Csa01g00634 158 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 41 125 IPR004038 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00634 K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 - csv:101208691 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00634 Csa-Chr1:4041091 Csa02g00180 Csa-Chr2:1249738 4.81E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010319 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00634 Csa_Chr01 FPKM 2.04484 2.547355 0.380753 0.248371 1.696432 2.478249 2.076913 0.956798 1.03173 0.702335