Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00637 ATGGCGATGCACATCCACATTAGAGCTTCCTCCATTCCTAGACATCACCACCCAACTCCTTCGCTTCCTTCTCCCTCTCACAGATCCGATTCCAAGTCCCAATTCCGTCCCATCTCCGTTTCTTTACCGGCTTCCACTACTCTCTCTCTCTTAGCTCTTTTTTCTTCTCCCTACGAAGCTAAGGCTCTCAACAAAGACCAAATCGTCTCATCTCTTAATGAAGTGGAGAAGACGTTTGATCAGGTTCAAGAAATGGGGTCGAATTTCTTCGATATTGCACAACAGGCTATTGAGTCTGCTAAAACTGTTTTGAAGCCGGGTGTTGATGCGGCGCTGCCGATTGTGAAGCAAGCTGGAGAAGAGGCTTTGAAGGTTGCTTCTCCAACTATTTCTGAGGCTTCAAAGAAAGCCCTTGAAGCACTTCAGGACTCTGGCATTGACACCGAACCTGTTCTTAGTGCTGCCAAGACAGTAGTAGGGGCAGCACAACAAACTGGTAAGGTCATTGAAGGTGCCAAGCCTATAGCGTCGTCGACTGTCGAGACGATCTCCACAACCGATCCTCTTGTAATTGCAGAAATTGCTGGAGTCTTAGCCTTGGCTTACCTGCTCTTTCCTCCAATTTGGTCTGCTATCTCTTTCAACTTTCGTGGCTACAAAGGTGAACTCTCTCCTGCTCAAACACTCGATCTAATTTCATCGAGCAATTACTTTCTAATCGATATTCGATCAGAGAAGGACAAGGATAAGTCTGGCATTCCCCGCCTTCCTTCAAGTGCAAAGAACCAAGCGATTGCCATCCCTTCCGAAGATTTACCAAACAAGTTGCGAGGCATTGTCCGAAACGTAAAGAAACTGGAAGCTGAACTTTCAGCCATCAAGATTTCATACCTCAAGAAACTTAACAAAGGCTCCAATATAGTGATCTTGGGCTCGTACTCAGACTCAGCAAAAGCAGTTGCAAAAGCACTAACAAGCCTTGGCTTCAAGAACTCCTGGATTGTAACTGATGGCTTTTTAGGTAGCAAAGGTTGGTTACAGAGTCGATTAGGAACAGATACATACAAGTTCTCATTCGCAGAGATCCTTTCGCCATCCCGAGTCATCTCATCTGGAACCAAACGTTTCGGGACGACTTCATTGACATCTACATCTAGTCAAAAATTGCTTCCTGGTGCTGATTAA 1185 45.57 MAMHIHIRASSIPRHHHPTPSLPSPSHRSDSKSQFRPISVSLPASTTLSLLALFSSPYEAKALNKDQIVSSLNEVEKTFDQVQEMGSNFFDIAQQAIESAKTVLKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALQDSGIDTEPVLSAAKTVVGAAQQTGKVIEGAKPIASSTVETISTTDPLVIAEIAGVLALAYLLFPPIWSAISFNFRGYKGELSPAQTLDLISSSNYFLIDIRSEKDKDKSGIPRLPSSAKNQAIAIPSEDLPNKLRGIVRNVKKLEAELSAIKISYLKKLNKGSNIVILGSYSDSAKAVAKALTSLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVISSGTKRFGTTSLTSTSSQKLLPGAD* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4048458 4052312 - CsaV3_1G006370.1 Csa01g00637 515134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00637 394 ProSiteProfiles Rhodanese domain profile. 233 354 IPR001763 -
Csa01g00637 394 Gene3D - 220 359 IPR036873 -
Csa01g00637 394 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 7 392 - -
Csa01g00637 394 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 222 341 IPR036873 -
Csa01g00637 394 MobiDBLite consensus disorder prediction 9 35 - -
Csa01g00637 394 CDD RHOD 227 341 - -
Csa01g00637 394 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 7 392 IPR044690 GO:0009704|GO:0071277|GO:0090333
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00637 - - - csv:101209180 724.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00637 Csa-Chr1:4048458 Csa02g01821 Csa-Chr2:17483216 4.19E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01898 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 75.8 9.3e-147 516.5
Csa03g01898 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 74.0 1.5e-113 406.0
Csa01g00637 . 36 312 Sulfurtransferasese/Rhodanese AT5G23060 64.1 4.4e-85 311.6
Csa03g00816 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 52.3 1.2e-119 427.2
Csa01g01557 . 6 610 Sulfurtransferasese/Rhodanese AT1G09280 64.3 1.5e-227 785.8
Csa05g00911 . 18 379 Sulfurtransferasese/Rhodanese AT2G40760 74.7 6.5e-157 550.8
Csa03g03819 . 7 304 Sulfurtransferasese/Rhodanese AT1G17850 64.9 2.2e-122 436.0
Csa04g02104 . 41 239 Sulfurtransferasese/Rhodanese AT2G42220 73.9 6.2e-84 307.4
Csa03g03072 . 13 217 Sulfurtransferasese/Rhodanese AT3G08920 58.5 1.6e-65 246.1
Csa01g00099 . 1 296 Sulfurtransferasese/Rhodanese AT4G24750 68.1 4.7e-113 404.4
Csa06g02507 . 67 249 Sulfurtransferasese/Rhodanese AT5G19370 63.6 1.8e-64 243.0
Csa03g00490 . 113 461 Sulfurtransferasese/Rhodanese AT5G55130 72.2 1.1e-148 523.1
Csa03g01965 . 54 237 Sulfurtransferasese/Rhodanese AT4G27700 79.3 1.5e-79 292.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00637 Csa_Chr01 FPKM 12.133631 13.616194 12.323926 10.942872 14.202826 18.856186 15.12956 7.548312 7.615885 9.327146