Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00638 ATGGGGAGTGGTAGAAAAAGGAGGAAGCAACATTTCAGAAGGATTCACGCTTTTCCTTGTGGTAGAGCTTCATTCAAAGATGAACATTCTTTAATTGGAGGGCCAGGATTCTCAAGGATAGTTTACTGCAACGATCCAGATAGTTTTGAGGCTAATCTTCTTAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTGTTGCTTCATTCTTCCCCAAATCATTGTTTGAGCAATTCAGAAGGGTTGCCAACTTGTATTTCCTTTTTTGTGCTTTGCTATCCTTTACCCCTCTTTCTCCATATTCGCCTGTCAGCAATGTTCTTCCTCTTGTTGTTGTTATTGGAGTCACCATGGGCAAAGAAGCTCTTGAAGATTGGAGGAGAACCAAACAGGATATGGAAATGAATAACAGGAAAGTGAAAGTACATATTGGAGATGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAGAGTTGGGCATGTAGTTAGAGTGGAGAAGGATGAATTCTTCCCCGCTGATCTCATTTTACTTTCGTCGAGTTATGAGGAAGCGATTTGCTACGTCGAGACGATGAATCTTGATGGAGAAACAAATTTGAAACTGAAAAACGCATTAGAAGCAAGCTCGAACTTACATGATGATTCAAGCTTCCAAAATTTCAAGGCTACAATAAAATGTGAAGACCCCAATGCCAATTTGTATTCCTTCGTAGGTAGTATGTTGCTTGAAGAACAACAACATCCCCTCAGCCCTCAACAACTTCTTCTTCGAGACTCAAAGCTTCGAAACACGGATTTTGTATACGGGGTGGTGATTTTCACTGGTCACGATACAAAGGTTATTCAGAACTCAACAGATCCTCCTTCCAAGCGAAGCAAGATTGAGAAAAGGATGGATAAGATTGTGTTCTTTCTGTTTGCTGTCTTGGTTTTGTTATCAGTTGTTGGGTCAATTTTCTTTGGTGTTAAGACTAGAGACGATTTAGAAAATGGAAGAGCTACGAGATGGTACCTACGGCCAGATGATACCACAACATATTACAACCCCAAAAATGCTCCAGCTGCAGCAGTATTGCAGTTTTTGACTGCTCTTATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATTGAAATTGTCAAAGTTCTGCAGAGTGTCTTCATCAACCAAGATCTACATATGTACCATGAGGAAACTGATAAGCCAGCTCATGCCCGCACGTCAAATTTGAATGAAGAGCTTGGCCAAGTTGACACTATTCTTTCCGATAAAACGGGTACATTGACTTGCAATTCAATGGAGTTCATCAAGTGTTCGGTGGGCGGTACTGCGTACGGGCGAGGAATTACAGAAGTAGAGAGAGCTCTTGCGAGAAGAAAGGAGTCGACTTTACCTCAAAACTTTGGGGCCGACAATGCACGTCTTAGCGGCGAAAAAACATTCGTTAAGGGGTTCAATTTCAAGGACGAAAGAATGATGGATGGTAATTGGGTGAAGGAGCCTCGAGCCAATGTAATCCAGAAGTTCCTACAGCTTCTGGCTATTTGCCATACGGCATTGCCCGAAATTGACGAGAAAACTGGAAAAATATCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTCGGTTTCGAGTTCTATGAAAGGAGTCAGACAAGCATTTCATTACGGGAGTTCGATCCGACCTCAGCTAAAAAAGTTGAAAGATCATATCAGCTACTGGATGTTTTGGAGTTTAATAGCACAAGAAAACGGATGTCTGTGATTATAAGAGATTCAAAGGGAAAACTACTACTTCTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCCAAGAATAGATGTGAGTTTGAAGAACAAACAAAGGTGCACGTCAATGAGTACGCCGATGCTGGTTTAAGAACTTTGGTTTTAGCATATCGTGAGCTGAAAGAGGAAGAGTTTAATTCATTTCATCAAGAGTTCATCAAAGCGAAAAACACAGTGAGCACAGATCGCGACGACATAATCGATCAGTTGACAGAAAGCGTTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAGGCCGGAATTAAAATATGGGTTCTGACTGGTGATAAGATGGAAACAGCCATCAACATTGGCTTCGCGTGCAGTTTACTTAGACAAGGAATGAAGCAAATAATTATCAGCTCAGAGACTCCAGAAGGAAAAGCTTTAGACAAAGTCGAAGATGATCACAAATCTGCAGCTATCAAGGCGTTTAAAACAAGTGTGACTCAACAAATAACTGATGCGAAAGCATTACTTACATCCTCAAGCGAAACTCCAGAAACATTGGCTTTGATAATTGATGGAAAGTCTCTCACCTATGCTTTGGAGGACGATGTTAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCTTCTCCTAAACAGAAAGCACAAGTTACCCAAATGGTTAAGGTTAAGACAGGCAGCACCACTCTAGCAGTTGGTGATGGTGCAAACGATGTCGGAATGATCCAAGAAGCGGATATCGGGATCGGTATTAGTGGTGTAGAAGGGATGCAGGCAGTCATGTCAAGTGATATTGCAATCGCACAGTTTCGATACTTGGAGCGGCTGCTCCTTGTGCATGGTCATTGGTGTTACAGAAGGATCTCATCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTTTATTCTTCTTTGAGATGTATGCATCATTCTCCGGCCAAACTGTATACAACGACTGGTTCCTTTCGCTGTATAACGTCTTCTTTACTTCTCTCCCTGTGATTGCATTGGGAGTGTTTGACCAAGACGTCTCATCCCGGTACTGTCTTAAGTTCTCACTTCTATACCAAGAAGGTGTCCAAAATGTGTTATTTAGTTGGGTTCGAATTTTTGGATGGGTGTTCAATGGGCTACTCAGTTCTGTCATCATATTCTTCTTTTGTGTTGGGGCAATGGACTATCAAGCTTTCCGCAACAGCGGAGAGGTCGTCGGGCTGGAAATTCTTGGTGTCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGCCAAATGGCATTGTCCATCAGTTACTTCACATATATTCAACATCTTTTCATCTGGGGCAGTATCGTTCTTTGGTACTTATTCCTCATGGCATATGGAGCTATAAACCCAACTATATCAACCACAGCATTTCAGGTATTCATTGAGGCATGTGCCCCGGCACCATCGTTTTGGATCCTCACACTTTTGGCTCTGGGAGCTTCCCTTCTTCCATACTTCGTCTTTGGCTCGATCCAAATGCGATTCTTCCCGATGTATCATCAAATGATTCAATGGATAAAAGCTGACGGACAGTTAAACGATCCAGAATACTGTCAGGTAGTGAGACAAAGATCATTACGACATACAACCGTCGGTTACACAGCTCGGTTCGAAGCATCAAAGCATTTTGAAGACTTCTCAGAAATCAAGAGTCATTAG 3591 41.66 MGSGRKRRKQHFRRIHAFPCGRASFKDEHSLIGGPGFSRIVYCNDPDSFEANLLNYGGNYVKTSKYTVASFFPKSLFEQFRRVANLYFLFCALLSFTPLSPYSPVSNVLPLVVVIGVTMGKEALEDWRRTKQDMEMNNRKVKVHIGDGEFVETKWMDLRVGHVVRVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHDDSSFQNFKATIKCEDPNANLYSFVGSMLLEEQQHPLSPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVIQNSTDPPSKRSKIEKRMDKIVFFLFAVLVLLSVVGSIFFGVKTRDDLENGRATRWYLRPDDTTTYYNPKNAPAAAVLQFLTALMLFSYLIPISLYVSIEIVKVLQSVFINQDLHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESTLPQNFGADNARLSGEKTFVKGFNFKDERMMDGNWVKEPRANVIQKFLQLLAICHTALPEIDEKTGKISYEAESPDEAAFVIAAREFGFEFYERSQTSISLREFDPTSAKKVERSYQLLDVLEFNSTRKRMSVIIRDSKGKLLLLCKGADSVMFERLAKNRCEFEEQTKVHVNEYADAGLRTLVLAYRELKEEEFNSFHQEFIKAKNTVSTDRDDIIDQLTESVEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISSETPEGKALDKVEDDHKSAAIKAFKTSVTQQITDAKALLTSSSETPETLALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQMVKVKTGSTTLAVGDGANDVGMIQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFEMYASFSGQTVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFSLLYQEGVQNVLFSWVRIFGWVFNGLLSSVIIFFFCVGAMDYQAFRNSGEVVGLEILGVTMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIVLWYLFLMAYGAINPTISTTAFQVFIEACAPAPSFWILTLLALGASLLPYFVFGSIQMRFFPMYHQMIQWIKADGQLNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEDFSEIKSH* 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4052892 4058649 - CsaV3_1G006380.1 Csa01g00638 515135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00638 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Csa01g00638 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 1141 IPR023298 -
Csa01g00638 1196 SUPERFAMILY Calcium ATPase, transduction domain A 143 284 IPR008250 -
Csa01g00638 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Csa01g00638 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 829 946 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00638 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Csa01g00638 1196 Gene3D - 544 697 IPR023299 GO:0000166
Csa01g00638 1196 SFLD Haloacid Dehalogenase 407 914 - -
Csa01g00638 1196 Pfam Cation transport ATPase (P-type) 533 623 - -
Csa01g00638 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 107 IPR032631 -
Csa01g00638 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Csa01g00638 1196 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Csa01g00638 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 699 IPR023299 GO:0000166
Csa01g00638 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1186 - -
Csa01g00638 1196 SUPERFAMILY HAD-like 420 918 IPR036412 -
Csa01g00638 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Csa01g00638 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 1186 - -
Csa01g00638 1196 SFLD p-type atpase 407 914 IPR044492 -
Csa01g00638 1196 Gene3D - 117 287 - -
Csa01g00638 1196 Gene3D - 698 903 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00638 Csa-Chr1:4052892 Csa02g00872 Csa-Chr2:8123011 0 dispersed
Csa01g00638 Csa-Chr1:4052892 Csa01g00639 Csa-Chr1:4067249 0 tandem
Csa04g01695 Csa-Chr4:16360280 Csa01g00638 Csa-Chr1:4052892 0 transposed
Csa05g02389 Csa-Chr5:26049570 Csa01g00638 Csa-Chr1:4052892 0 transposed
Csa06g00450 Csa-Chr6:3849237 Csa01g00638 Csa-Chr1:4052892 1.18E-108 transposed
Csa06g00451 Csa-Chr6:3851908 Csa01g00638 Csa-Chr1:4052892 3.44E-97 transposed
Csa07g00483 Csa-Chr7:3494288 Csa01g00638 Csa-Chr1:4052892 3.81E-179 transposed
Csa07g02379 Csa-Chr7:21930097 Csa01g00638 Csa-Chr1:4052892 0 transposed
Csa01g00638 Csa-Chr1:4052892 Csa05g02560 Csa-Chr5:26977036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00638 K01530 K14802 csv:101205650 2328.13