Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00641 ATGGTCGAATTGGATGAGAAAGTTCCCTCCTCATCAGAGGTTGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACTACTACGGAAGAATTGGAACTTCAAAGTTCAATGCAAGGCGAAGAAGAAGGGGAAGAAGATGGTGTAAGCAACGAACCAGAGGAGAGAGTGAAAAAAAACGAGATGAAGAAGAAGAGGAAGACGAAGACGAAAACAAAGGTGAATGACGAGTTGGAAGACGAAGGGAACGATAATGTTAATGATGGCGAGGGCGAGGATGGCGTGGAAGGGGAGGGTGAGGAGGATGAGAATAAGAAAAATAAGGCTAAGACTGGTGGGTCAGGAATTATGAGTTCCGTTTCATTTGATTCGCTTGAATTGTCAGAGAAAACTCTACGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAATTGGGAAAGATATTCTTGGAGCTGCAAGGACTGGATCCGGAAAAACTCTTGCTTTTCTTATACCAGCTGTGGAGTTGCTGCATCACATTTGCTTTACTCCTCGAAATGGAACTGGCGTTATAGTTATTTGCCCAACACGGGAGCTTGCGATGCAGACACATGAAGTAGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACCGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTCAATCTATTAATAGCAACCCCTGGTCGTCTTCTCGACCATCTTCAGCACACCAAGAATTTTGTGTTCAAAAACTTGAAGTGTCTCATAATCGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAATCTTCTCCCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTGGAAGATCTTGTTCGCTTGTCATTTCAGTCAACTCCTATTTATATTGATGTGGACGATGGTAGAACAAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTGTGCCCAGCTCTAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAAAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCATCTTGTAATTCTGTGAAATTCCATGCGGACCTTCTTAGATATATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCCAGACTGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGATATACCTGCTGTCGATTGGATTGTGCAGTACGATCCTCCAGATGAACCGAAGGAATACATTCACAGAGTTGGTCGAACAGCTCGAGGGGAAGGTAGCAAAGGAAATGCCCTACTTTTCCTGATTCCTGAAGAGATTCAGTTTCTTCGCTATCTGAAGGCAGCAAAAGTTCCAGTCAAAGAGTATGAGTTTAGCGATAAGAAACTGGCCAACGTGCAATCTCATCTGGAGAAACTAGTTGGGAGCAATTATTATTTGAACAAGTCAGCTAAGGATGCTTATAGATCCTATATATTAGCTTACAATTCACACTCAATGAAAGATATTTTCAATGTCCACCGCCTTGATCTGCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCGAAGGTGAACCTTAACATTGACAGCAGTGCCTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGCGTCAACAACAGATTCAGTAAGAGCAAGAAAGAGGGAGATGACAGACAGTTCGTAAGATACTAA 1827 42.31 MVELDEKVPSSSEVEAMNKRRKRKRPKKNLPSTTTEELELQSSMQGEEEGEEDGVSNEPEERVKKNEMKKKRKTKTKTKVNDELEDEGNDNVNDGEGEDGVEGEGEEDENKKNKAKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQARAIPPSLIGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIINLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKKNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAQTGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSKGNALLFLIPEEIQFLRYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGVNNRFSKSKKEGDDRQFVRY* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4089424 4094042 + CsaV3_1G006410.1 Csa01g00641 515138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00641 608 Pfam Helicase conserved C-terminal domain 363 466 IPR001650 -
Csa01g00641 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 488 IPR027417 -
Csa01g00641 608 MobiDBLite consensus disorder prediction 87 105 - -
Csa01g00641 608 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Csa01g00641 608 SMART helicmild6 386 467 IPR001650 -
Csa01g00641 608 CDD SF2_C_DEAD 347 477 - -
Csa01g00641 608 MobiDBLite consensus disorder prediction 1 124 - -
Csa01g00641 608 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 95 577 - -
Csa01g00641 608 Pfam Domain of unknown function (DUF4217) 508 568 IPR025313 -
Csa01g00641 608 Pfam DEAD/DEAH box helicase 150 321 IPR011545 GO:0003676|GO:0005524
Csa01g00641 608 SMART DUF4217_3 507 570 IPR025313 -
Csa01g00641 608 MobiDBLite consensus disorder prediction 1 19 - -
Csa01g00641 608 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Csa01g00641 608 PANTHER RNA HELICASE 95 577 - -
Csa01g00641 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 516 IPR001650 -
Csa01g00641 608 Gene3D - 103 338 IPR027417 -
Csa01g00641 608 CDD DEADc_DDX18 137 334 IPR044773 GO:0003724|GO:0005524
Csa01g00641 608 SMART ultradead3 145 350 IPR014001 -
Csa01g00641 608 MobiDBLite consensus disorder prediction 42 56 - -
Csa01g00641 608 Gene3D - 343 591 IPR027417 -
Csa01g00641 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 332 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00641 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101209673 1071.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00641 Csa-Chr1:4089424 Csa01g03422 Csa-Chr1:31158338 5.78E-61 dispersed
Csa01g00730 Csa-Chr1:4617836 Csa01g00641 Csa-Chr1:4089424 0 transposed
Csa02g00007 Csa-Chr2:172192 Csa01g00641 Csa-Chr1:4089424 3.65E-89 transposed
Csa03g00520 Csa-Chr3:4343806 Csa01g00641 Csa-Chr1:4089424 8.03E-107 transposed
Csa03g01568 Csa-Chr3:11655627 Csa01g00641 Csa-Chr1:4089424 1.14E-38 transposed
Csa03g04201 Csa-Chr3:36847442 Csa01g00641 Csa-Chr1:4089424 2.54E-63 transposed
Csa05g00080 Csa-Chr5:395605 Csa01g00641 Csa-Chr1:4089424 5.32E-74 transposed
Csa05g00304 Csa-Chr5:1923939 Csa01g00641 Csa-Chr1:4089424 1.91E-58 transposed
Csa05g00854 Csa-Chr5:6479569 Csa01g00641 Csa-Chr1:4089424 7.44E-86 transposed
Csa05g02370 Csa-Chr5:25939381 Csa01g00641 Csa-Chr1:4089424 1.73E-11 transposed
Csa06g01154 Csa-Chr6:9625292 Csa01g00641 Csa-Chr1:4089424 3.65E-65 transposed
Csa06g03809 Csa-Chr6:30233803 Csa01g00641 Csa-Chr1:4089424 8.49E-37 transposed
Csa07g01354 Csa-Chr7:13428313 Csa01g00641 Csa-Chr1:4089424 7.24E-49 transposed
Csa07g01431 Csa-Chr7:14540867 Csa01g00641 Csa-Chr1:4089424 7.32E-77 transposed
Csa01g00335 Csa-Chr1:2079545 Csa01g00641 Csa-Chr1:4089424 1.08E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00641 Csa_Chr01 FPKM 18.973145 21.045872 18.924389 18.951221 19.232441 20.969782 19.392578 24.26338 24.536198 26.657217