Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00642 ATGTCTTTTCTCCACTGTTATTCACCCTTCAAACCTTTCCCACTTGCTTTCTTCGTCCTCCTCCTCTCCTTCCATTTCTTCCCAGCAATCAGCACTGATTTCCTTGTTGGCGACAGCGATGGCTGGTCAGCCCCTAAACCAAAAGAAGCTGACAAATACAACAAATGGGCTTCCCACAACAGATTCAATATCGACGACACTGTCCATTTCAAGTACGAGAAAGATTCAGTGATGATGGTGACGGAGGAAGAATACAAACAATGTGTTTCACCAAAGCCTCTATTTTATGAAAACAATGGAGATAGTGTGGTAAAGCTTGACAGAGCAGGATTGTTCTATTTCATTAGTGGAGTTTCAGGGCATTGTCAGAAAGGTCAGAGAATGATAATCAAAGTGTTAGAACCTATGAGTCCTCCACACCCACCCACTGTTCCACCAGATGAAAAAAGTGGTGCTGCACATTCTAATTTGGTCTCTGTTACATCTTCATTCTTGGGGATGTTCTTCATGTTGTTCTTTGCTCTGTTTTTGTCGATTTGA 540 42.22 MSFLHCYSPFKPFPLAFFVLLLSFHFFPAISTDFLVGDSDGWSAPKPKEADKYNKWASHNRFNIDDTVHFKYEKDSVMMVTEEEYKQCVSPKPLFYENNGDSVVKLDRAGLFYFISGVSGHCQKGQRMIIKVLEPMSPPHPPTVPPDEKSGAAHSNLVSVTSSFLGMFFMLFFALFLSI* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4094426 4095658 - CsaV3_1G006420.1 Csa01g00642 515139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00642 179 Gene3D - 30 137 IPR008972 -
Csa01g00642 179 SUPERFAMILY Cupredoxins 31 133 IPR008972 -
Csa01g00642 179 ProSiteProfiles Phytocyanin domain profile. 32 134 IPR003245 GO:0009055
Csa01g00642 179 PANTHER EARLY NODULIN-LIKE PROTEIN 6 18 163 - -
Csa01g00642 179 PANTHER BLUE COPPER PROTEIN 18 163 IPR039391 GO:0009055
Csa01g00642 179 Pfam Plastocyanin-like domain 49 126 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00642 - - - csv:101205884 334.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00642 Csa-Chr1:4094426 Csa05g01864 Csa-Chr5:21915051 4.38E-42 dispersed
Csa05g02494 Csa-Chr5:26621595 Csa01g00642 Csa-Chr1:4094426 5.03E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g376 . . . . . . . . Cmo13g01087 . . . . . . Cpe20g00102 . . . . . . . . . . . . . . . . . . . Lsi02g00157 Csa01g00642 Chy12g01460 Cme12g01900 . . . Bda14g00907 . Bpe15g00551 Bma03g00881 . Sed08g2159 . . Cma13g01046 Cma18g00027 Car13g00879 . . . Bhi08g01036 Tan05g2299 Cmetu12g1793 Lac10g0209 Hepe07g2420 . . Cla04g01116 Cam04g1169 Cec01g1680 Cco01g1728 Clacu04g1197 Cmu04g1176 Cre01g1475 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00642 Csa_Chr01 FPKM 13.752096 14.108522 15.853664 15.732642 17.75992 16.171106 17.122263 23.148752 22.388821 22.982882