Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00644 ATGTTGCGAACCCCCAAATTTCTTCATTCCCCAAACCTTTCTTCTCAAACCCAAACCCAAACCCAAACCCAAAACATCCCCACTTCTTCAAAATTTCCATTCATCAAACAATGTTGCAAAATCTCCCGCCGGAATCTCACCATTGGAACCAATTCCCTCTTACTTCTTCTCTTTAACTCTCAAATTCAAGACCCATTTTTAATGTCCTCCAAAGCAGAGGTTGAAGAAGAAGAATTACAGAGTCCTAAAAATGATGACTTTCTTTGCACTGGAAAGATCCCTACGAAACGTGCATTTCTTGATATCTCCATTGATGGAGTTCCTGCTGGTCGCATTATCATTGGCCTTTATGGCAATGATTCCCCAGCAGGAGTTGCAAGGTTTAGCAATCTTGTAAGCGGAGCTGCTGGCATTTCTTATAGAAGAAAAGACTTTGTAAAGATCACTTCAAATTATGTTCAACATAGTGGAGTTAGATCTTATGGTGTGGATTTTGAGCTTGCAAAGAGGAATGGGAATGAATTAGTATCTGAAACTCTTAAGGATGAATGGGAGAGAGCGAATGAGAAATGTTCTGGGACTAAGAATTTGGCTTCGACTGTGGGGATCATTGTGAGAGACCCTTTAAAACCACCTCCTAAGTTGAAGTTGGTAGCTAGGAAAGGGAAGCTGGAGGTTGATCAGGAACAGGTCGGTACCGAACCGAATGGGACGGAGTTCACGATATCGGTTAAGGATTCACCAGAGCTTGATGATTCAGCTTTGGTGATTGGAATTGTTTTGGATGGAATGGAAGTTGTGGAGAAGATTGCACAAGTGAAGACTGTTAAAGATAATACTACTTCTCCTTATTTCAGAGTCGCAAAGATAATAGGCGATAAAAGAGCTGTTGTTGCAGAAAGAGGGTTCAACCGTCCTTATTCTAAAGTGATTGTCACAAACTGTGGGTTGCTAGAGGAATGA 963 41.33 MLRTPKFLHSPNLSSQTQTQTQTQNIPTSSKFPFIKQCCKISRRNLTIGTNSLLLLLFNSQIQDPFLMSSKAEVEEEELQSPKNDDFLCTGKIPTKRAFLDISIDGVPAGRIIIGLYGNDSPAGVARFSNLVSGAAGISYRRKDFVKITSNYVQHSGVRSYGVDFELAKRNGNELVSETLKDEWERANEKCSGTKNLASTVGIIVRDPLKPPPKLKLVARKGKLEVDQEQVGTEPNGTEFTISVKDSPELDDSALVIGIVLDGMEVVEKIAQVKTVKDNTTSPYFRVAKIIGDKRAVVAERGFNRPYSKVIVTNCGLLEE* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4098779 4103129 - CsaV3_1G006440.1 Csa01g00644 515141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00644 320 MobiDBLite consensus disorder prediction 1 25 - -
Csa01g00644 320 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 317 IPR002130 GO:0000413|GO:0003755
Csa01g00644 320 MobiDBLite consensus disorder prediction 8 25 - -
Csa01g00644 320 Gene3D - 89 320 IPR029000 -
Csa01g00644 320 SUPERFAMILY Cyclophilin-like 94 318 IPR029000 -
Csa01g00644 320 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 319 IPR044185 -
Csa01g00644 320 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 100 283 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00644 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - csv:101210168 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00644 Csa-Chr1:4098779 Csa05g01343 Csa-Chr5:14214134 7.06E-13 dispersed
Csa01g00644 Csa-Chr1:4098779 Csa02g00254 Csa-Chr2:1729702 2.75E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g374 . . . . . . . . . Cmo18g00024 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0002 Cone19ag0003 Lsi02g00159 Csa01g00644 Chy12g01458 Cme12g01898 . . . Bda14g00908 . Bpe15g00550 Bma03g00883 . Sed08g2161 . . . . Car13g00876 Car18g00160 . . Bhi08g01195 Tan05g2296 Cmetu12g0160 Lac10g0211 Hepe07g2418 . . Cla04g01114 Cam04g1167 Cec01g1678 Cco01g1726 Clacu04g1195 Cmu04g1174 Cre01g1473 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011034 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00644 Csa_Chr01 FPKM 2.142857 3.05675 1.498697 1.190392 1.349389 0.541384 0.0 2.67456 2.204385 1.971979