Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00648 ATGGCCAAGCCTCGCAAGCCCAAGAACACCGACGACGCCAAGCCACCTGACAACTCCGGAGCTGTAGTTCGTCACCAGAAGCTCTGTCTTTCCATCGACATTGACAATCGTCGCGTTTATGGGTTCACCGAGTTGGAAATTGCGGTTCCTGATATTGGTATAGTTGGGTTGCACGCGGAGAATCTTGGGATTGTGAGTGTTTCAGTGGATGGTGACCCAACTGAATTTGAGTATTATCCGCGGCCTCAACATGTGGAAAATGAGAGGAGTTTTAAAGCAGTTTCGTCGCCGAGCTCTGCTGCAGATGCTGCAGGGTCAATCTATTTGTCTTCAATAGAGAAGGAATTGGTTCCTAATTTGTTGATAAACTGCTGCAAGGCTTTCAAGAGTGGAAGCGAGCAGCAAGACCAGCCATTTCTGGAGAATGGAGTGCAAACTGCGGATGAGGACAAGCAGAATGTAAGGCTGGTTCGTATTGATTACTGGGTAGAGAAATCAGAGGTAGGTATTCACTTCTATAATCGTATGGCTCACACTGACAACCAAATAAGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGATGGTCTACAACGATGCAAGTATGACCTCGAGTTTACTGTCTCTCAAAATCTTGTGGCTGTCAGTAATGGAATTTTGTTGTACCAGGTCTTGAGCAAAGACAATCCTCCCCGCAAAACTTTTGTGTATAGGGTAGACATCCCTGTCAATGCACGTTGGATATCACTTGCTGTTGGACCGTTTGAAATCCTTGCTGATCACCAAAATGTACTTATATCACACATGTGCTCGCCTGTTAATTCTTTAAAGCTCAAGCATACGGTGGATTTTTTTCATAGTGCATTCAGCTGCTATAAGGATTACCTCTCCGTGGACTTCCCATTTGGGTCATATAAACAAATCTTCATAGAGCCGGAGATTGCAGTATCATCAGCATGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATCGATCAGACCATTGATACGAGGATTAAACTTGCTTATGCGCTGGCAAGACAGTGGTTTGGCATTTATATTACACCTGAAGCTCCAAATGATGAGTGGTTGTTGGATGGTCTTGCTGGTTTTTTGACTGATTTATTTATTAAGAAGAACTTGGGAAATAATGAGGCACGCTACCAGAGATACAAGGCAAATTGTTCTGTTTGTAGAGCAGATGATTGTGGTTTGACCACCTTGAGTTCCTCTTCTGCTTGTAAAGATTTGCATGGGACCCAATGTATTGGTATATATGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAAAAGCAGATGGGGCCTGAATCTTTCCGCAAGATTCTACAAAATATTGTTTCTCATGCTAAAGATACTGGTTCTACGTCACAATTACTCAGCACGAAAGAGTTTCGTCAATTGGCCAATAAGATTGGAAACCTAGAGCGACCATTTCTTAAAGAGTTCTTTCCTCGATGGGTTGAATCATGTGGTTGTCCACTGCTGAGAATGGGATTTTCCTACAACAAGCGAAAAAATATGGTTGAAATGGCAGTTTCACGGGAATGCACAGCTACACCAGCCACAAATGTAGAAAATCGGGACAGTGATGCTGGATGGCCTGGCATGATGAGTATCAGGATTTATGAACTTGATGGTGTCTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCTTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGGCGCCTCCAGAAAACTAAAAAGGGGTCAAAACCTGATGGTTCTGATGACAATGCTGATATACCTGCACTCGACATTCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTTGCTGAAATTCATTTTCATCAACCTGTTCAGATGTGGATCAATCAATTAGAGAAGGACAAGGATGTCATTGCCCAAGCACAAGCAATTGCGACCTTAGAGATGCTGCCTCAACCATCTTTTTCTATTGTTAATGCTCTTAACAATTTCCTCAAAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCACTGGCAATGGCCAAAACAGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTTAAAAGTCAGAGGTTTGATGCTGATACTGGACTCCCCAAGCCAAACGAATTTCGTGATTTTCCTGAATATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGGCACCGACCAAAAAAGCCCTAGAGAAGCCGTTGAGTTTGTTTTGCAACTTTTGAAGTACAATGACAACAATGGGAATCCTTACTCTGATGTTTTTTGGTTGGCTGCACTAGTCCAATCAGTTGGTGAGCTTGAATTTGGGCAACAGAGCATTCTCTTTTTAGCATCGCTTCTCAAAAGGATTGATAGACTTCTGCAGTTTGACAGGCTGATGCCTAGCTATAATGGGATATTGACCATTAGCTGCATCAGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTATCATTGAACTGATAAGACCTTTTCGAGATTTTAATTCCATGTGGCAAGTTCGAATTGAGGCAACCCGATCACTTCTCGATCTGGAGTACCACTGCAACGGAATTGATGCCACATTGTTATTGTTTATTAAATATCTAGAAGAAGAGAATTCCTTGCGAGGGCAAGTGAAGCTCGCAGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGGTTCAAATGATGTAGTCAATAATGACACTCTTGTTGCTTTGCTCCTTCTATTAGAAGGCAATATGGCGTTTAACAACGTCTATCTTCGTCACTACTTGTTCTCTATTTTACAAGTTCTTTCAGGGAGGTCCCCAACACTTTATGGAGTTCCTAGAGAATATAAAACATTGCATATGGGAGACACGGGAACTTTCAGTGAACAGAAAAGGATGTTAACGTCTATCATTCCTGAATTTAACCCACCAGAGCCATCATCAGTCTCTGCAGTTGCGCCTATGCCATGTATTCCAGCAACTCTTTCATCAGAACCGCTTCATGTTCCCACACCGAGGCCTGACAACTTGGCAGTTCCCGAGCTTTCCAAGGAAGAAGGAGCAATTGCAGAGGATCCTAAGCAAGCTATGGCAATAGTTGAAGCTCCGAGAGAAGCAGCCTCTGTTTCCAGTAGTCATGAGAGGAAGTTACCAGTTGTTAAGATCAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCTGATAATCTAACCACTGAAAGATCGCATGCTGCACCTCGTGAAACAGATGTTGGTCCTAGTAGTTCTGTTTCTGTTGATGCACCCCCAAGAAATACTGCTGAGGCTACAAGTATCAGCAACCGTATTCTGGAGGAGGTAAACTCCTGTCACGATCACGGGTCTCATATGACAGCCAGCATTGGCAGTGCAAAACTTGCAAGTTATGGTGATGAACTTGGGAAGGAATTCCAGTGCACTGCTGATTCCAGCAGTCGAGCTTTTGGACATTTTCAGCCAGAAGATCCTTCATCATCGAGCATCATACAAGATAACAATATTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACACTTTCTTTACCACAGCATGATCATGGCTTAGCCTCTTCGCACTCTCGCCATGGGAAAAAAGAAAAGAAGAAAGACAAAGAAAAGAAACGTAAGCGAGAAAGTCATAAAGAACATCGCAACGATCCTGAATACATTGAGCGCAAGCGACTGAAGAAAGAGAAGAAACAAAAAGAAAAGGAGATGGCAAAGCTATTGAACGAAGAGGTGAAGCCACAGCCTACTGCAATGCCTCGTATAAAAGAACCACCAACCAAGTCAACACCCGTGCAATTGGAAACAAATGAACCTAGTGGATCAAGATTAATCATAGGATCAGTTCATAGTAAGCCGGAGGCATCAGAAGGTACAACTTCTGCTGCCCCCAAACTTAGAATTAAATTTAAAAACCGAACGTTGAACAATTCATAA 4089 42.87 MAKPRKPKNTDDAKPPDNSGAVVRHQKLCLSIDIDNRRVYGFTELEIAVPDIGIVGLHAENLGIVSVSVDGDPTEFEYYPRPQHVENERSFKAVSSPSSAADAAGSIYLSSIEKELVPNLLINCCKAFKSGSEQQDQPFLENGVQTADEDKQNVRLVRIDYWVEKSEVGIHFYNRMAHTDNQIRRARCWFPCMDDGLQRCKYDLEFTVSQNLVAVSNGILLYQVLSKDNPPRKTFVYRVDIPVNARWISLAVGPFEILADHQNVLISHMCSPVNSLKLKHTVDFFHSAFSCYKDYLSVDFPFGSYKQIFIEPEIAVSSACLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCSVCRADDCGLTTLSSSSACKDLHGTQCIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSHAKDTGSTSQLLSTKEFRQLANKIGNLERPFLKEFFPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTATPATNVENRDSDAGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDIRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAIATLEMLPQPSFSIVNALNNFLKDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRGTDQKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRIIELIRPFRDFNSMWQVRIEATRSLLDLEYHCNGIDATLLLFIKYLEEENSLRGQVKLAVHVMRLCQIMRRSGSNDVVNNDTLVALLLLLEGNMAFNNVYLRHYLFSILQVLSGRSPTLYGVPREYKTLHMGDTGTFSEQKRMLTSIIPEFNPPEPSSVSAVAPMPCIPATLSSEPLHVPTPRPDNLAVPELSKEEGAIAEDPKQAMAIVEAPREAASVSSSHERKLPVVKIKVRSSAATSRADADNLTTERSHAAPRETDVGPSSSVSVDAPPRNTAEATSISNRILEEVNSCHDHGSHMTASIGSAKLASYGDELGKEFQCTADSSSRAFGHFQPEDPSSSSIIQDNNIDADAQKYASLQTLSLPQHDHGLASSHSRHGKKEKKKDKEKKRKRESHKEHRNDPEYIERKRLKKEKKQKEKEMAKLLNEEVKPQPTAMPRIKEPPTKSTPVQLETNEPSGSRLIIGSVHSKPEASEGTTSAAPKLRIKFKNRTLNNS* 1363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4118084 4135335 + CsaV3_1G006480.1 Csa01g00648 515145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1313 1328 - -
Csa01g00648 1362 Gene3D Neutral Protease Domain 2 259 511 IPR027268 -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g00648 1362 Coils Coil 1272 1297 - -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 596 615 - -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1240 1260 - -
Csa01g00648 1362 Gene3D tricorn interacting facor f3 domain 21 253 IPR042097 -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1233 1328 - -
Csa01g00648 1362 Pfam Peptidase family M1 domain 283 480 IPR014782 GO:0008237|GO:0008270
Csa01g00648 1362 CDD M1_like_TAF2 25 507 - -
Csa01g00648 1362 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 20 1294 IPR037813 GO:0005669
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1098 1143 - -
Csa01g00648 1362 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 263 516 - -
Csa01g00648 1362 SUPERFAMILY ARM repeat 443 977 IPR016024 -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1261 1293 - -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 1124 1143 - -
Csa01g00648 1362 MobiDBLite consensus disorder prediction 599 613 - -
Csa01g00648 1362 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 12 254 IPR042097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00648 K03128 TAF2; transcription initiation factor TFIID subunit 2 - csv:101210662 2637.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00648 Csa-Chr1:4118084 Csa04g02560 Csa-Chr4:25215448 1.53E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00648 Csa_Chr01 FPKM 5.79805 7.777238 23.791391 28.484331 116.798027 123.577003 109.154213 3.176757 2.774538 2.162196