Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00653 ATGATTATCGGTGCTTCTATATCTTCAGTCGCCGCCCTCCGCCTTCCTTTTTCCTTCCATTGCTTTCCAACCTCCAAAACCCTCATTTCTTTCCCTTCTCTATCCCTCCTTCATTCTCCAACTTTCCATATCTTTTCTTCAATCACTTCTTCCATTACTGCCTCGATGTCCACTTCCTCGTCTCCGACCACAGAGCAGCCGGCTTTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTCGGCCTCGGAAATCCCGGGAAGAAGTACGATCGTACGCGCCATAATGTAGGTTTTGAGATGGTGGATGCTGTAGCTGAAGCTGAAGGGATATCCATCAGTAATGTTTCCTTCAAAGCTCTGATAGGGAAGGGTTTCATCGGGGATGTTCCTGTAATGCTAGCTAAGCCACAAACTTTCATGAATGCAAGTGGTGAGTCAGTCGGTGCTATTGTTTCCTACTATAAGATTCCATTGAAGCAAGTACTTGTGATTTTTGATGACTTGGATTTGCCTTTTGCCAAATTGCGAATGCTGCCGAAGGGTGGCCATGGAGGGCATAATGGAATGAGGAGTATTATTGATCATTTCAAAGGCAGTCGTGATTTCCCTCGATTAAGAATTGGCATAGGGAGACCTCCCGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACAAACAAGAAAGAGAAGAGTTGAACTTTACATTGCAAGTTGGCGAAGACGCAATACGGATTCTTTTGCTTGAGGGGTTCAACAAAAGCGCAACATTTGTCAATACCAACAAGTCTCTGGAACAAATAAGTTGA 825 45.7 MIIGASISSVAALRLPFSFHCFPTSKTLISFPSLSLLHSPTFHIFSSITSSITASMSTSSSPTTEQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVSFKALIGKGFIGDVPVMLAKPQTFMNASGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRMLPKGGHGGHNGMRSIIDHFKGSRDFPRLRIGIGRPPGKMDAANFVLRPFNKQEREELNFTLQVGEDAIRILLLEGFNKSATFVNTNKSLEQIS* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4188353 4192903 - CsaV3_1G006530.1 Csa01g00653 515150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00653 274 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 186 196 IPR018171 GO:0004045
Csa01g00653 274 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 93 106 IPR018171 GO:0004045
Csa01g00653 274 Hamap Peptidyl-tRNA hydrolase [pth]. 80 258 IPR001328 GO:0004045
Csa01g00653 274 TIGRFAM pth: aminoacyl-tRNA hydrolase 82 261 IPR001328 GO:0004045
Csa01g00653 274 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 28 270 - -
Csa01g00653 274 MobiDBLite consensus disorder prediction 56 80 - -
Csa01g00653 274 Pfam Peptidyl-tRNA hydrolase 82 260 IPR001328 GO:0004045
Csa01g00653 274 Gene3D - 68 268 IPR036416 GO:0004045
Csa01g00653 274 PANTHER PEPTIDYL-TRNA HYDROLASE 28 270 IPR001328 GO:0004045
Csa01g00653 274 SUPERFAMILY Peptidyl-tRNA hydrolase-like 80 265 IPR036416 GO:0004045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00653 K01056 PTH1, PTRH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] - csv:101211885 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00653 Csa-Chr1:4188353 Csa01g03055 Csa-Chr1:26633999 9.54E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g347 . Blo16g00141 . . . Bpe13g00341 Bma06g00002 . . Cmo18g00031 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00169 Csa01g00653 Chy12g01448 Cme12g01888 . . . Bda14g00913 . Bpe15g00544 Bma03g00889 . . . . . Cma18g00036 . Car18g00030 Cpe09g01144 . Bhi08g01217 Tan05g2282 . Lac10g0222 . . . Cla04g01104 Cam04g1157 Cec01g1667 Cco01g1713 Clacu04g1184 Cmu04g1164 Cre01g1462 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004590 1 5 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00653 Csa_Chr01 FPKM 1.733569 2.19763 113.561142 114.646164 249.97319 268.049438 253.29277 37.062962 37.589607 38.188763