Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00665 ATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATATAGATCCCAACCAAAACCCAAATCTTAATTTTCTTGACAACATTCCAATTTTGTTCAGTGAAAGTTTCTTTAACAATCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAATTGGGGAGAAAATTTCCAAGGGATTTTCTCTCATCATCAAGCCAATCAGATCATAACTCCCACTTCTTCTCCTGTTTTTGAGCCTAAAAATCTATTTGGAAATGACCTCCATGGAAGCAAGAAAAGAAAGCTTGAAAATAATGATGCATATGAAAGCAGCTCTGGCAACTCTACCCCTCAAGTTTCTGAAAATGGGATCAACACCAAAAATAACAATGGAAAAGAGAAGCGGTCGAAAAAAGGCGACACAAACGACGGCGAAAAACCGAGGGAAGTTGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGACAAACTGAAGGGAAAGGAAATAAGAGAAGGAAATGGAGGAATATCAATGATTGGATCATCAACTCAACTTGGTCCCTTTGACTTGTGCTTTGGTTCATATTCAACATTGCCATTCAACACCATATGA 837 38.47 MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4277323 4279125 - CsaV3_1G006650.1 Csa01g00665 515162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00665 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 227 IPR036638 GO:0046983
Csa01g00665 278 MobiDBLite consensus disorder prediction 107 127 - -
Csa01g00665 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Csa01g00665 278 MobiDBLite consensus disorder prediction 104 167 - -
Csa01g00665 278 PANTHER TRANSCRIPTION FACTOR BEE 1 2 246 - -
Csa01g00665 278 MobiDBLite consensus disorder prediction 79 98 - -
Csa01g00665 278 Gene3D - 156 228 IPR036638 GO:0046983
Csa01g00665 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 246 IPR024097 GO:0006355
Csa01g00665 278 MobiDBLite consensus disorder prediction 128 167 - -
Csa01g00665 278 CDD bHLH_AtBPE_like 149 234 - -
Csa01g00665 278 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Csa01g00665 278 SMART finulus 165 215 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00665 Csa01g00391 CCT
Csa01g00665 Csa01g00391 ECH
Csa01g00391 Csa01g00665 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00665 Csa-Chr1:4277323 Csa03g02075 Csa-Chr3:16961726 9.03E-42 dispersed
Csa01g00391 Csa-Chr1:2423148 Csa01g00665 Csa-Chr1:4277323 1.74E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30670 PF00010 HLH 5.40E-05 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00665 - - csv:101213736 568.155