Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00668 ATGCTGTCTATGGGGCTTTTGTCTTCTCTCTGCCTCTGCTTGCAGAAAAAACTTAAACCTGCTAATTCTGCTGGTGCCGACGAAGCGGATGATGAAGATGTGTCCACTGACATCTTCTTTGAACTGAATACTTTGCAAATTGCTACTAATTTCTTTTCTGAGGTGAATAAGCTCGGCAATGGAGGGTTTGGGCCCGTCTACAAGGGTTTGATGCCAAATGGCCAACAAGTAGCAGTCAAGAAGCTGTCGATAGATTCAAGACAAGGAGTGAAGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACAGAAATTTGGTCATTTTATTGGGCTGTTGTGTGGAAGGACCTGAAAAGATGCTTGTATATGAATACCTGCCAAACAGAAGTCTTGATTACTTTATTTTTGATAAAAAGAAGTCTCCATCCCTGGATTGGACAACACGGTTCCATATAATTACAGATTTTGGACTAGCACGACTTTTTCCTGGAGAAGATACACACTTGAATACATTTAAGATCGCTGGTACTCATGGCTATATGGCTCCCGAGTACGCAATTCATGGATATTTATCTGTAAAGAGTGACATATTCAGTTTTGGCATCTTGGTGTTGGAGATTGTTAGTGGAAGAAAAAATCATGACATTCGACTTGGCGCACAACAAGTCGACCTCTTGGGATACGCATGGTTGCTTTACCAAGAAGGAAGGGTTTTAGAATTAGTGGATCAAAGCCTCACAAAATACAATGTAGATGAGGCAGCTATGTGCATACAGTTGGGCTTGTTATGTTGTCAAGCAAAGGTTTCAGATAGGCCTGATATGAGTACCACTCATCTCATGCTTTCTAGTGATTCATTCACGTTGCCACGACCTGGAAAGCCTGGAATTCATGGTCGAGCACCACGTCATCGAACAACTACCTCTACTTTGGCTTTCACCAAGACGAATACTAGTACACATAGTGGGGTTACCAAAGCTTCTACTAGTAATAGTTTGATGGAAGATTATTCAAGGAATTCCATGTCCGTTTCTTCTTTTGATGAAGGCAGGTGA 1062 41.34 MLSMGLLSSLCLCLQKKLKPANSAGADEADDEDVSTDIFFELNTLQIATNFFSEVNKLGNGGFGPVYKGLMPNGQQVAVKKLSIDSRQGVKQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFDKKKSPSLDWTTRFHIITDFGLARLFPGEDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDIFSFGILVLEIVSGRKNHDIRLGAQQVDLLGYAWLLYQEGRVLELVDQSLTKYNVDEAAMCIQLGLLCCQAKVSDRPDMSTTHLMLSSDSFTLPRPGKPGIHGRAPRHRTTTSTLAFTKTNTSTHSGVTKASTSNSLMEDYSRNSMSVSSFDEGR* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4295378 4299708 - CsaV3_1G006680.1 Csa01g00668 515165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00668 353 ProSiteProfiles Protein kinase domain profile. 52 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00668 353 MobiDBLite consensus disorder prediction 305 335 - -
Csa01g00668 353 SUPERFAMILY Protein kinase-like (PK-like) 40 298 IPR011009 -
Csa01g00668 353 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 155 351 - -
Csa01g00668 353 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 156 - -
Csa01g00668 353 MobiDBLite consensus disorder prediction 291 335 - -
Csa01g00668 353 Gene3D Transferase(Phosphotransferase) domain 1 39 157 - -
Csa01g00668 353 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 155 351 - -
Csa01g00668 353 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 156 - -
Csa01g00668 353 Gene3D Transferase(Phosphotransferase) domain 1 158 290 - -
Csa01g00668 353 Pfam Protein tyrosine and serine/threonine kinase 154 281 IPR001245 GO:0004672|GO:0006468
Csa01g00668 353 Pfam Protein tyrosine and serine/threonine kinase 55 151 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00668 - - - csv:101214463 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00668 Csa-Chr1:4295378 Csa03g04115 Csa-Chr3:36063471 6.68E-88 dispersed
Csa01g00668 Csa-Chr1:4295378 Csa07g00396 Csa-Chr7:2907579 7.70E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g307 . . . . . . . . . . . . . . . Cpe20g00125 . . . . . . . . . . . . . . . . . . . Lsi02g00185 Csa01g00668 . . . . . . . . . . . . . . . . . . . Bhi08g01238 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012066 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77750 PF07714 PK_Tyr_Ser-Thr 1.40E-10 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00668 Csa_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.996902 4.639412