Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00669 ATGAGACCTTCTTCGGATAGAATCAACATCGCCGCCAGTACCCGGCGGGTCGTTGTTGACAATCGATTTCCTCTTCGTTATTACTATCGTGTCGCCGATAATGTTTTGAAACAGGCTGACATCTTTCGAGCAGAGAAGAACATAATCGATCTTTATGTCATGTTAATGAGATTTTCAAGTTTGGTCACTGAGACGATACCTCGTCATTTGGAGTATGGGACAACTCCAAAATTCCAAAAAAATCATTTTAGAAAGAAGCTATTAGATGCTTTGAGCGAGCTTGAAGAGTTGAAGCCAGCAGTGCAAAGAAAGGTGGATGAAATAAATGGGAAACAAAAATATCAAGTTAACGGGCGGGGTAATCAGCAACAAAATGGTTCATTGGAATGGCATTCTGGTGGAAAGCAATATCTTCCTAATAATGGCATGGCTAAGGCTGGTAGATCACCTGCTCGAGAAATTGCTCGTCAAGGTTCAGGACCTCAACAATTTTCATATTCCAGACCTATTCATATTCCACTCCCGAAGGAGGAAACATTATCCCGTCATTCTATCTTGGGTCCCAATGGGCTTCGTGGCCAGTGGCAACCACCTACCATTGATAAAGGGGTCCAATATCCACGTATTTTGGATGTGTCTCCCGTTGACATTCCAAGCTTACAACAATCAATAGACAAACTTACAATAGAAAAAGATCTTGGAAACTTGGAAAAAAAAGGATCTGATATAGAATCAATCTGCACCCAGAATAATGATCACGAGAATAATGCCACGGAAACAGATTCCTTGATCTCGTTTGAAAATGTTGAGATGCCTGCCCCTATTGAAATTGTGCGGCAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAGGATCTGATACCTGCAGTGTCACCTCAAGTTTCGGAGGTAGAATGTGCAAGAGACACTTCATTGTCGGATGGTTTTGTTCATCCTGAACCTTCTATGCAGTTGCATATTTCAACCACGATGATGGAGAGTTTCATGAGGCTAGCCAAGTCAAATACTGCCAAGAATTTAGAAACCTGTGGTGTTCTTGCCGGTTCACTTAAAAACAGAAAATTTTACATCACTGCATTAATTGTACCAAAGCAGGAGTCAACACCAAATACTTGTCAGGCAACAAATGAAGAAGAGATATTTGACGTGCAGGATAAGCGGTCTCTATTCCCACTTGGGTGGATTCATACACATCCTACACAGTCATGCTTCATGTCGTCCGTTGATGTCCACACACATTACTCATATCAGGTAATGTTGCCTGAAGCTGTTGCAATTGTAATGGCTCCCAAGGACAGTGCAAGAACCCATGGTATTTTCCGGTTGACAACTCCCGGCGGCATGTCAGTGATTCGGCAATGCCAACAACGTGGCTTTCACTCACATGGTCAGCCTCCTGATGGCGGACCCATTTACAAAACCTGTACAGATATATACATGGACCCCAATTTGAAATTTGATGTCATTGATCTTCGATGA 1500 42.67 MRPSSDRINIAASTRRVVVDNRFPLRYYYRVADNVLKQADIFRAEKNIIDLYVMLMRFSSLVTETIPRHLEYGTTPKFQKNHFRKKLLDALSELEELKPAVQRKVDEINGKQKYQVNGRGNQQQNGSLEWHSGGKQYLPNNGMAKAGRSPAREIARQGSGPQQFSYSRPIHIPLPKEETLSRHSILGPNGLRGQWQPPTIDKGVQYPRILDVSPVDIPSLQQSIDKLTIEKDLGNLEKKGSDIESICTQNNDHENNATETDSLISFENVEMPAPIEIVRQPSPPPVLAEVQDLIPAVSPQVSEVECARDTSLSDGFVHPEPSMQLHISTTMMESFMRLAKSNTAKNLETCGVLAGSLKNRKFYITALIVPKQESTPNTCQATNEEEIFDVQDKRSLFPLGWIHTHPTQSCFMSSVDVHTHYSYQVMLPEAVAIVMAPKDSARTHGIFRLTTPGGMSVIRQCQQRGFHSHGQPPDGGPIYKTCTDIYMDPNLKFDVIDLR* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4298591 4307353 + CsaV3_1G006690.1 Csa01g00669 515166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00669 499 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 324 428 IPR000555 GO:0005515|GO:0008233|GO:0008237
Csa01g00669 499 Pfam USP8 dimerisation domain 11 100 IPR015063 -
Csa01g00669 499 ProSiteProfiles MPN domain profile. 325 455 IPR037518 -
Csa01g00669 499 Coils Coil 84 111 - -
Csa01g00669 499 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 1 499 - -
Csa01g00669 499 CDD MPN_AMSH_like 324 499 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Csa01g00669 499 SUPERFAMILY JAB1/MPN domain 323 455 - -
Csa01g00669 499 SMART pad1_6 324 452 IPR000555 GO:0005515|GO:0008233|GO:0008237
Csa01g00669 499 Gene3D Cytidine Deaminase, domain 2 311 499 - -
Csa01g00669 499 Gene3D - 1 131 - -
Csa01g00669 499 PANTHER AMSH-LIKE PROTEASE 1 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00669 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - csv:101214704 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00669 Csa-Chr1:4298591 Csa06g01758 Csa-Chr6:15467606 5.20E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g306 Blo04g00830 . . . . Bpe13g00355 Bma06g00047 . Cmo13g01061 Cmo18g00038 . . . . . Cpe20g00126 . . . . . . . . . . . . . . . . . Cone13ag0305 . Lsi02g00186 Csa01g00669 Chy12g01434 Cme12g01872 . . Bda11g01770 . . . Bma03g00896 . Sed08g2186 . . Cma13g01020 Cma18g00045 Car13g00854 Car18g00039 Cpe09g01135 . Bhi08g01239 Tan05g2262 Cmetu12g0605 Lac10g0242 Hepe07g2388 . . Cla04g01086 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005782 2 1 1 3 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00669 Csa_Chr01 FPKM 0.0 0.962404 0.0 0.784895 0.0 0.0 0.0 1.469849 1.82246 2.168733