Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00670 ATGTGCTCGGAAATATCCTCACCCAGAATATCATTCTCGCATAATCTTATATGTGAGAGTAGATCGCCGATGGATCAGTACGTCGAGTACAGGCGGCGAGACGTGTCGTTGTTGGATTCGATAGACTTTGAGTTCAACATCAGCATTGAACATGAATCTTCCTGTGCAGATGAGATTTTTAGCAATGGAATCATTCTTCCTATCAAAATTCAGTCTCACAAACAATCTCATCCTTCACTTCCTCCTCTTCCTCCTTCCATAGAACATTCAAAGAAAATCACATTGGTGACTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGATCATCAGTTAGAACAGAGAGTTTCAGAGTCCAAATCCTTTTGGGGATTCAAAAGAAGTACGAGTCTCAACAACTTTGAAACTAAAACACTATCTCTTTGCCCAATTCCACTTCTATCAAGAAGCAACTCAACTGGGTCAGTTTCAAATTCAAAATCCAAAAAGTTTAAAGATTCACAAAAGCAAAATTCTCAGAAACAGAACTCATCATCAATGAGAAAGTCGTCGCCGTCACCACCGTCTTCGTTAAATCAATATCCAACAATTCTAAAGCCTCAAATGTGCAAGAATCCAGGTGGGGTTTATGGAACTTATCATTATATTGGTCCTGTGTTGAACGTTCCTCCAAAGTTTTTTGGTTTTGGTTCACTTCTTGGATGTGGGAAAGAAAAAAAGATAAACCCTTCTTCTTTGCATTTGGTTTTGCTTAAGCTTCTTCTTTCCATGGACGGCCATGTCTACGATCCCTTCGATTCACTCGCAAAACTTTGCCTCATTTCCCACTCCCAAGAGGATATATTACGTCACTGCTCTTTCGCCGGCGCCCCTAACTCCCTTGATGCCTCTCGTTTTCCGCCCTCCCAATTCCTTCACCCTTACCCCACTCCTGTTTCCACGGCTTCTCCTCCGGAAAGTTTGGAACAAAGAGAACAACTCATCTCTCCTGATGCCTGCCAGCCTCCACCGGAACAGTCTGGTGGACGCCGGCCCGTGGTTGTTGATGATCCTTCTGTTCAAGATGCCGCCGCGGCGGTTGGAGGTGGATGTGTGAGCAATGTTCCTACTGGAGTCGATTTGGGGAAAAATGATGAACTAGGGTTTCTCGAAGTTCAATCCACTCGACAGACTGATGGAATTGAGATTATCGGTGTTCGTAGAAGCAAGGTTTCGGAGTCTGGTACTGATGGAGAAGCTGAATCGGCATCAAAGAGGTTGAAGCTCTCGAATGAAGCTTTGGGCAAAGACTCTTCTGTACCTTTTGTCGGTCTACTGATCGAGAAATCGGTACCAGTCGGTGAAGAATCCGGCAAAATTGATGATGGAAAGGTCTCCAATGGGGAAGAAACTCACTGTAACAAGAACAAGCAAAACTTGACAGAGAAGAAAGTCGAAAATTCCCAGCCTGAAGTACCGGGCGAGTACGACGGAGTGATGAATCGCGATGCAGGGAGGGAGACTCTGATATCAATATTGAATGGATTGATTTCGAAGGAGAAAAATGATGATGCAACCTCATCTGGTGAATCTGGGAGTGGCAATTCCATCATTATGGAAATCTTGAAGATTTTGTCACAAGTAGAAAGAAGTGATGAAGACGAGAAATTAGCAGACATGAATCTTATTGAAGTGGCAATGAGCCGTGGAATGACATTTCCTCGGCCGTGTTGGTGGCCGGAGGAGTATGGTTCCAACGGCTTGGAGAAGAAAAAGTGA 1767 43.86 MCSEISSPRISFSHNLICESRSPMDQYVEYRRRDVSLLDSIDFEFNISIEHESSCADEIFSNGIILPIKIQSHKQSHPSLPPLPPSIEHSKKITLVTSSSSSSSSSSSSSSDHQLEQRVSESKSFWGFKRSTSLNNFETKTLSLCPIPLLSRSNSTGSVSNSKSKKFKDSQKQNSQKQNSSSMRKSSPSPPSSLNQYPTILKPQMCKNPGGVYGTYHYIGPVLNVPPKFFGFGSLLGCGKEKKINPSSLHLVLLKLLLSMDGHVYDPFDSLAKLCLISHSQEDILRHCSFAGAPNSLDASRFPPSQFLHPYPTPVSTASPPESLEQREQLISPDACQPPPEQSGGRRPVVVDDPSVQDAAAAVGGGCVSNVPTGVDLGKNDELGFLEVQSTRQTDGIEIIGVRRSKVSESGTDGEAESASKRLKLSNEALGKDSSVPFVGLLIEKSVPVGEESGKIDDGKVSNGEETHCNKNKQNLTEKKVENSQPEVPGEYDGVMNRDAGRETLISILNGLISKEKNDDATSSGESGSGNSIIMEILKILSQVERSDEDEKLADMNLIEVAMSRGMTFPRPCWWPEEYGSNGLEKKK* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4310545 4313593 + CsaV3_1G006700.1 Csa01g00670 515167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00670 588 MobiDBLite consensus disorder prediction 173 198 - -
Csa01g00670 588 MobiDBLite consensus disorder prediction 308 328 - -
Csa01g00670 588 MobiDBLite consensus disorder prediction 153 198 - -
Csa01g00670 588 MobiDBLite consensus disorder prediction 94 115 - -
Csa01g00670 588 PANTHER BNAANNG22500D PROTEIN 1 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00670 - - - csv:105434796 380.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02554 Csa-Chr2:22379319 Csa01g00670 Csa-Chr1:4310545 1.54E-23 transposed
Csa03g00233 Csa-Chr3:1864446 Csa01g00670 Csa-Chr1:4310545 1.61E-22 transposed
Csa06g00326 Csa-Chr6:2432340 Csa01g00670 Csa-Chr1:4310545 2.20E-18 transposed
Csa01g00395 Csa-Chr1:2446759 Csa01g00670 Csa-Chr1:4310545 1.68E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g301 . . Bda06g00809 . . . . Bma12g01233 Cmo13g01060 . . . . . . Cpe20g00127 . . . . . . . . Cla06g01459 Cam06g1611 Cec06g1673 Cco06g1667 Clacu06g1575 Cmu06g1527 Cre06g2338 . . Cone2ag0431 Cone16ag0569 Lsi02g00187 Csa01g00670 . Cme12g01871 . Blo15g00067 . . Bpe07g01038 . . . Sed08g2187 . . Cma13g01019 . Car13g00853 Car18g00040 Cpe09g01134 . Bhi08g01240 Tan05g2261 Cmetu03g1280 Lac10g0243 Hepe07g2387 . . Cla04g01085 Cam04g1138 Cec01g1648 Cco01g1697 Clacu04g1166 Cmu04g1147 Cre01g1442 Lsi06g01322 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003525 0 0 1 2 0 2 1 2 2 2 2 2 2 2 1 2 2 0 2 2 2 1 2 2 2 2 2 2 2 0 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00670 Csa_Chr01 FPKM 11.015304 12.312694 28.086052 29.940691 10.959292 10.178053 9.409631 14.575586 14.037542 14.026788