Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00672 ATGGCTAATGATCCGCTGAAGCATTCTCCATCTCAGTTTTCCCAAATCTTCCATGTGTTCTTCTTACTTGTTGGTTTCTCCATTGGAATGGCTGTCAGTTTGAACCTCAAGAGCTTCTCATCATTCAACATCCAGCTCCCCAACTTTTCCTTACCATCTTCACCATCAACAACACTAGTGTTTATCAGACAACAACAACCACCTCCGGCCTCATCGTCACCGCCACCACTTCAACCGCCATCTCCTTCAGTTGACTCCTCCGAAATGAATAGTTTTTTTGAGGTGAACGTAGAGCCGCCTCTAATGCATAGAATGAGTGATGACGAGGTGTTTTGGAGAGCATCCATGGTTCCAATGATCAAAGAATTTCCATACGAACGTGTGCCAAAAATTGCTTTCATGTTCCTGATAAAAGGGTCATTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGACACGAACACCTGTTCTCAATTTATGTGCATACTCATCCATTGTATAATGTTTCTTCTTCTCTGCCTCCAAACTCTGTCTTCTATGGAAGAAGAATCCCAAGCCAGGCAGTGCAATGGGGGAGACCTTCCATGATCGACGCCGAGCGTCGCCTTCTAGCAAACGCCCTTCTCGACTTCTCTAATGAAAGATTCATCCTCCTCTCAGAAACGTGCATTCCTCTCTACAACTTCACCACCATCTATAACTACCTCATTAATTCGCAATACACCTTCGTTTCTTCCTACGACGATCCCCGAAAAATAGGTCGTGGTCGATACAACCCCCGGATGTTTCCAGTCATATCGATCGCCGATTGGCGAAAAGGATCGCAGTGGATTGAAGTTGATCGAAGGGTGGCCATCGAGATAATCTCCGACTCAACATATTACCCTGTTTTCAGGGAGCACTGTGGGCCGCCATGTTACATGGACGAGCATTACATTCCTACATTGGTTAATATTGTTTTGCCAGACCGGAACTCCAACCGAACCGTTACTTGGGTTGACTGGTCCAAAAATGGTCCGCACCCTGGCAGATTTGGGAGACGGGAGATCTCGGTCGAGCTTTTGAACCGGGTTCGGTTTGGTTTTAATTGTAGTTATAATGATGGAAACGAGACCGTTTCACTATGCTTTTTGTTTGCTCGGAAATTCATGCCCGATTCTTTACAGCCTCTGCTCAAGATTTGGCCGTCGCTATTGCAAGGTTTGATTTAA 1215 45.51 MANDPLKHSPSQFSQIFHVFFLLVGFSIGMAVSLNLKSFSSFNIQLPNFSLPSSPSTTLVFIRQQQPPPASSSPPPLQPPSPSVDSSEMNSFFEVNVEPPLMHRMSDDEVFWRASMVPMIKEFPYERVPKIAFMFLIKGSLPLAPLWEMFFKGHEHLFSIYVHTHPLYNVSSSLPPNSVFYGRRIPSQAVQWGRPSMIDAERRLLANALLDFSNERFILLSETCIPLYNFTTIYNYLINSQYTFVSSYDDPRKIGRGRYNPRMFPVISIADWRKGSQWIEVDRRVAIEIISDSTYYPVFREHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVELLNRVRFGFNCSYNDGNETVSLCFLFARKFMPDSLQPLLKIWPSLLQGLI* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4318571 4320365 + CsaV3_1G006720.1 Csa01g00672 515169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00672 404 MobiDBLite consensus disorder prediction 63 87 - -
Csa01g00672 404 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 9 401 - -
Csa01g00672 404 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 9 401 IPR044174 GO:0016757
Csa01g00672 404 Pfam Core-2/I-Branching enzyme 131 359 IPR003406 GO:0016020|GO:0016757
Csa01g00672 404 MobiDBLite consensus disorder prediction 68 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00672 - - - csv:101207079 804.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00672 Csa-Chr1:4318571 Csa04g02519 Csa-Chr4:25004583 2.39E-129 dispersed
Csa01g00672 Csa-Chr1:4318571 Csa01g00673 Csa-Chr1:4322051 1.67E-114 tandem
Csa03g02020 Csa-Chr3:16188848 Csa01g00672 Csa-Chr1:4318571 1.73E-139 transposed
Csa05g02066 Csa-Chr5:23963010 Csa01g00672 Csa-Chr1:4318571 7.23E-131 transposed
Csa01g00397 Csa-Chr1:2479842 Csa01g00672 Csa-Chr1:4318571 1.42E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00672 Csa_Chr01 FPKM 0.0 0.0 0.104761 0.0 0.0 0.0 0.0 0.191861 0.363492 0.0