Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00676 ATGTCATCAAAAAGACCCTTCACCGAAATTGATTCATGTACCGATCAGCAGATTCAGACGAAACGACCTCGCCAGTCGTTTGCCTCGATCATTGGGGAAGTTGTAATGGTGAATTCCTTAAGACATTTATCAAAAGCACTGGAACCATTACTCAGACGTGTGGTGAATGAAGAAGTCGACCGGTGTTTGATTCGTTATTCAAGATCATTAACCAGAGCATCTTCTTTAAAGATACAACCCTTAGAACCATCTAGTTTTCAGTTATATTTTGTGAATAATCTTCCCTCTACTATTTTTACTGGGAGTAAAATTACCGACGTTGAGAGTCGACCACTCAGAATCGCTATCGAAGTAGGTGGTGAAGATCCGTCGTTGCTGCCTATTTCAGCGTTGTTGAAAATTGAAATCGTTGTTTTGGATGGGGAATTTGCGTCGGGAGATCGGGAGGATTGGACGGCTGAGGAATTTAATGCTAGCATTGTTAAGGAAAGATCTGGAAAGAGGCCACTGCTTCACGGCGAAATGAATGTAGTTCTTAGGCACTGTGCTGCGACGATTGGGGATCTTGAATTCACCGATAACTCAAGTTGGATAAGGAGCAGAAAGTTTCGGTTGGGAGCCCGAATTGTTTCCGGTTCGGACCGAGATAAATTCCCCCGCATTAGGGAAGCCATAACCGAACCTTTCGTGGTTAAAGATCATCGTGGTGAATTGTACAAGAAGCATTACCCTCCAATGTTGAATGATGAAGTATGGCGACTGGAAAAGATTGGGAAAGAAGGAGTGTTTCACAAAAAATTAAGCAATTACAATATCAAAACAGTTCAAGAATTTTTACAGCTTTACACTATTGATCCACAAAAACTAAGAACGATTTTAGGGGTAGCAATGTCTGAAAAGATGTGGGATGCAACAGTAAAACATGCAAAAACTTGTGAATCAGGAAGCAAGCTCTACATGTTCCGTGGACCCAATTTCTTGCTGTTTTTGAACCCAATTTGTGAAGTTGTTAGAGCCATGATTGGAGAACAAATATATTCGTCTCGAGACCTCCACAATATCCCCCAGGATTACTTGAAGAATTTGAGGAGACAAGCATTTGATAACTGGGCTTCCCTACAAGACTTTGAAGGAAACTTGAGAGAATCATTGTCATTAACACAAGGCAATGAAGGCAGTGAGTTTCTAGTTGGGAAATCTTTGCTTCAAAGTAGCTATGAGTTTCTAAGTGGGCAACTCGAATGCCAAGATTGGGATTCCAATTCCGAAAATCAGTTTAATATCTCTGCAAGAATCGAAGGGAATTTTCACTGTAATTTTGGATAG 1326 40.87 MSSKRPFTEIDSCTDQQIQTKRPRQSFASIIGEVVMVNSLRHLSKALEPLLRRVVNEEVDRCLIRYSRSLTRASSLKIQPLEPSSFQLYFVNNLPSTIFTGSKITDVESRPLRIAIEVGGEDPSLLPISALLKIEIVVLDGEFASGDREDWTAEEFNASIVKERSGKRPLLHGEMNVVLRHCAATIGDLEFTDNSSWIRSRKFRLGARIVSGSDRDKFPRIREAITEPFVVKDHRGELYKKHYPPMLNDEVWRLEKIGKEGVFHKKLSNYNIKTVQEFLQLYTIDPQKLRTILGVAMSEKMWDATVKHAKTCESGSKLYMFRGPNFLLFLNPICEVVRAMIGEQIYSSRDLHNIPQDYLKNLRRQAFDNWASLQDFEGNLRESLSLTQGNEGSEFLVGKSLLQSSYEFLSGQLECQDWDSNSENQFNISARIEGNFHCNFG* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4339659 4342085 + CsaV3_1G006760.1 Csa01g00676 515173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00676 441 Pfam Calmodulin binding protein-like N-terminal domain 86 234 IPR046831 -
Csa01g00676 441 PANTHER PROTEIN SAR DEFICIENT 1 1 428 - -
Csa01g00676 441 Pfam Calmodulin binding protein central domain 246 312 IPR046830 -
Csa01g00676 441 Pfam Calmodulin binding protein C-terminal domain 317 375 IPR046829 -
Csa01g00676 441 PANTHER OS02G0177800 PROTEIN 1 428 IPR012416 GO:0005516
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00676 - - - csv:101215184 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00584 Csa-Chr1:3737469 Csa01g00676 Csa-Chr1:4339659 3.98E-10 dispersed
Csa01g00676 Csa-Chr1:4339659 Csa01g02131 Csa-Chr1:18554661 1.76E-93 dispersed
Csa01g00676 Csa-Chr1:4339659 Csa02g00482 Csa-Chr2:3417962 1.02E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g293 Blo04g00832 . . . . . . . Cmo13g01056 Cmo18g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00676 . . . . . . . . . . Sed08g2191 . . . Cma18g00048 . Car18g00042 . . Bhi08g01244 Tan05g2251 Cmetu12g0949 Lac10g0248 Hepe07g2379 . . Cla04g01080 Cam04g1127 Cec01g1640 Cco01g1686 Clacu04g1157 Cmu04g1138 Cre01g1436 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00676 Csa_Chr01 FPKM 15.096977 14.398598 8.966022 9.000753 33.711613 31.672998 32.855854 6.276611 6.77314 5.111716