Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00678 ATGTATTTGACAATTTCTTTATATTCTGACTGTGAGTCTGTACCACCATACACCCCTGCTTGTTCTGAAGCTGCATATAGCTACATCCCAGAAAAAACGCAACATATCACCGCTCAGTTTACGTCAGGGCGGACGGTAAATGTTCAAGTATGTAACAATTGCAAAGATTCTGGTGGTGGTGGTGTTTATGTTTATGACTTGGAATTGAATCAATCAAGATGCTGCTGTCAATCTTCCTTTGATAGGATTGAATTCTGTTCTTCCTCACTACTTGCAGCAACACCACGACCTTCTCCATCCAGATCGGGAATGTCAAATACGTCAACAGAAGCACCTTCTCCAGACAAGGATGAAAATATCGCTCCGTATGCAAATATCACTTTAAGTGTCACCGGAAGCATCATTTTGATCTTCGTTATAATCATCCTTTTCATCTACTACACAAGAAAAATGAGACTTACCAACTCAAACAAACAAGACCTTATCGAAGAAACCATCAAAAGATATTCCACACGAATACCAAAGCGATATACTTACTCAACTCTGAAGAAAATCACTGATTCTTTCAAGAACAAGCTTGGTCAAGGAGGGTTCGGCACAGTCTACAAAGGAAAGTTACTTGACGGACGCGACGTGGCTGTAAAACTTCTGAATGAATCCGGAGAAAATTGCCAAGATTTCATCAATGAAGTCATAAGCATCACAACAACTTCCCATGTAAACATAGTCACTTTCTTGGGGTTCTGCTATGAGCGGAACAAAAGAGCTTTGATTTATGAGTACATGCCTAAAGGGTCATTAGACAAATACATATGTCACAAAGGGCAACAAAAAGATAAAATTGAATTGAGTTGGATGACTCTATATAACATCATTGTGGGCGTGGCTCGAGGATTAGAATACTTGCATCGCGGCTGCAATACAAGGATTCTACATTTTGATATCAAGCCACACAACATTCTTTTGGACGATGAGTTTTGCCCCAAGATCTCCGACTTTGGGCTTTCAAAGCAGTGGAAGACAAAAGAGAGTCATGTGTCGATGTCAGGTTCATAG 1056 40.15 MYLTISLYSDCESVPPYTPACSEAAYSYIPEKTQHITAQFTSGRTVNVQVCNNCKDSGGGGVYVYDLELNQSRCCCQSSFDRIEFCSSSLLAATPRPSPSRSGMSNTSTEAPSPDKDENIAPYANITLSVTGSIILIFVIIILFIYYTRKMRLTNSNKQDLIEETIKRYSTRIPKRYTYSTLKKITDSFKNKLGQGGFGTVYKGKLLDGRDVAVKLLNESGENCQDFINEVISITTTSHVNIVTFLGFCYERNKRALIYEYMPKGSLDKYICHKGQQKDKIELSWMTLYNIIVGVARGLEYLHRGCNTRILHFDIKPHNILLDDEFCPKISDFGLSKQWKTKESHVSMSGS* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4345978 4348074 - CsaV3_1G006780.1 Csa01g00678 515175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00678 351 PANTHER - 39 350 - -
Csa01g00678 351 SMART serkin_6 187 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00678 351 Gene3D Transferase(Phosphotransferase) domain 1 262 351 - -
Csa01g00678 351 ProSiteProfiles Protein kinase domain profile. 187 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00678 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Csa01g00678 351 SUPERFAMILY Protein kinase-like (PK-like) 166 345 IPR011009 -
Csa01g00678 351 MobiDBLite consensus disorder prediction 94 116 - -
Csa01g00678 351 Gene3D Phosphorylase Kinase; domain 1 159 261 - -
Csa01g00678 351 Pfam Protein kinase domain 190 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00678 351 MobiDBLite consensus disorder prediction 94 114 - -
Csa01g00678 351 PANTHER RUST RESISTANCE KINASE LR10-RELATED 39 350 IPR045874 GO:0004672
Csa01g00678 351 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00678 Csa-Chr1:4345978 Csa01g00685 Csa-Chr1:4367399 1.77E-103 dispersed
Csa01g00678 Csa-Chr1:4345978 Csa01g00682 Csa-Chr1:4360196 7.11E-103 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77752 PF00069 Pkinase 7.80E-35 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00678 - - cmo:103499200 393.66