Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00680 ATGAAAATGTACCTAAAACCCAGAAATAGTACCTTATTCTTCTTCTCCATCGCGTTTCACCTTTCCATATGTTTCAGCGAAGATTGCGGTGAGAGTTACAATTGCGGCGAATTAGTAAACATCAGGTATCCCTTTTGGGGGAATAAGAAGGAGACAGTATGCGGGCAGCAAGAATTCAAACTGAAGTGCAGGAACAACCAAACCACCACAATTTACATAAACTCTTTCGAATACAACGTTCTGAGAATCGACCAATCGAATAGTAGAATGAGGATAGCAAGATCAGACTTGTTCGAGAATTGCTGCCCAGAAAAGGAAATCCAAGTGGCGACTATGAATGGGCATCGGTTCGTGTATTCTTCCAACAATCAGAATATTTCGGTATGGTACAATTGCTCGACGGATAACGAAATTCAAATTCCAGATACTTACAAATTTTGGTGCGGTGGGAAATGGGAAAAGCTTCGGAGACCGAATTATGCATTCGAGCCGTCGGCGAAGAGTTGGAGTCTAGAAAGGGGGGAATGCGGAATGAACATAGAGGTGATGGTCACGAGAGAGGGGCTGAAAGAAGGTATAAAAGAGAGGAAAAGTTTGGTGGAGAAGGCTGTGAAATGGGGTTTCGATGTGGAATATGAGAATTGGTATAAGGATGCTTGTAATGAATGCAATGAAAATGGAGGAAAATGTGGAGGGAACAACACGCATCCATACTACTGCATTTGTACCAATGGAATTGCTAGTTCCTACGACTGTAAAGCTCCTCCTCCTCCTCTTCCCCCTCCTCATGCTCCTAATATTATTAAAGGATCATATGATACTTGGAAGAAGATTATGATAGGTGTTGGCTCTGGTTTAGGAGGCATAGTGATTATGAGTCTAATCTTCTTAATTAGGAATCGTTTGAACAAAAATAAGCATCCCTATGCTTCTTCCTCCATTCTCCTTCCAAATAATTCTCGTGATCGTCTAATGAAGGCACTTGATCAGCATGGAGAAAATTCCGTGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACGAGCTACAGACAAATTTAACACCACCAACGAACTTGGAGATGGTGGCTTTGGCACCGTCTACTATGGCAAACTCCGAGATGGACGTGAGGTTGCAGTTAAAAGATTGTTTCAAAATAGCTATAGAAAAGTTGAGCATTTCATGAATGAAGTGGAGATCCTTACTCGTTTGCGCCACCCACATCTAGTCACTCTTTATGGATGCGCCTCTCAACGATGTCGTGAACTATTTTTGATTTATGAATTTGTACCAAATGGTACAGTTGCCGATCATCTTCACGGCATCCAAGCAAGACCAGGTCAGCTTCCATGGCTTACAAGGTTGAAGATTGCCATAGAGACAGCAAGTGCTCTCGCTTTTCTCCATGCTTCAGAAACCATCCACCGCGATGTTAAAACCACCAACATTCTCGTTGACAACAACTTCAATGTCAAAGTTGCCGATTTCGGACTGTCTCGTCTTTTTCCTACACAAGTGACACATGTTTCAACTTCTCCACAAGGAACTCCAGGATATGTTGATCCAGAGTATCACGAATGTTATCAACTGACAAAGAAAAGCGATGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCACTAGGCACAGGCATGAGATTAATCTATCGACAATGGCAATCAACAAGATCCAGAACAACGAATTAGACGACTTCGTGGACCCATGTCTTGGATTTAAAACAGATGAAAGAATCAGAGACATGATATGCAGAGTAGCAGAGTTGGCATTTCAATGCCTTCAAAGTGTGAGGGATACAAGACCCTCAATGTTGGAAACACTACAAATTTTGAGAAACATAGAGAATAGAAGTTAG 1899 41.92 MKMYLKPRNSTLFFFSIAFHLSICFSEDCGESYNCGELVNIRYPFWGNKKETVCGQQEFKLKCRNNQTTTIYINSFEYNVLRIDQSNSRMRIARSDLFENCCPEKEIQVATMNGHRFVYSSNNQNISVWYNCSTDNEIQIPDTYKFWCGGKWEKLRRPNYAFEPSAKSWSLERGECGMNIEVMVTREGLKEGIKERKSLVEKAVKWGFDVEYENWYKDACNECNENGGKCGGNNTHPYYCICTNGIASSYDCKAPPPPLPPPHAPNIIKGSYDTWKKIMIGVGSGLGGIVIMSLIFLIRNRLNKNKHPYASSSILLPNNSRDRLMKALDQHGENSVAVPLFSYQELVRATDKFNTTNELGDGGFGTVYYGKLRDGREVAVKRLFQNSYRKVEHFMNEVEILTRLRHPHLVTLYGCASQRCRELFLIYEFVPNGTVADHLHGIQARPGQLPWLTRLKIAIETASALAFLHASETIHRDVKTTNILVDNNFNVKVADFGLSRLFPTQVTHVSTSPQGTPGYVDPEYHECYQLTKKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNNELDDFVDPCLGFKTDERIRDMICRVAELAFQCLQSVRDTRPSMLETLQILRNIENRS* 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4352931 4355752 - CsaV3_1G006800.1 Csa01g00680 515177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00680 632 Pfam Wall-associated receptor kinase C-terminal 160 244 IPR032872 -
Csa01g00680 632 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Csa01g00680 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 631 IPR044652 -
Csa01g00680 632 SUPERFAMILY Protein kinase-like (PK-like) 337 626 IPR011009 -
Csa01g00680 632 Gene3D Transferase(Phosphotransferase) domain 1 430 632 - -
Csa01g00680 632 ProSiteProfiles Protein kinase domain profile. 353 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00680 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 12 631 - -
Csa01g00680 632 SMART serkin_6 353 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00680 632 Pfam Wall-associated receptor kinase galacturonan-binding 29 94 IPR025287 GO:0030247
Csa01g00680 632 Pfam Protein kinase domain 354 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00680 632 Gene3D Phosphorylase Kinase; domain 1 325 429 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00680 Csa01g00398 CCT
Csa01g00398 Csa01g00680 ECH
Csa01g00680 Csa01g00398 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00680 Csa-Chr1:4352931 Csa02g02560 Csa-Chr2:22403360 1.47E-159 dispersed
Csa05g02395 Csa-Chr5:26098077 Csa01g00680 Csa-Chr1:4352931 2.82E-85 dispersed
Csa01g00680 Csa-Chr1:4352931 Csa01g00682 Csa-Chr1:4360196 2.49E-114 proximal
Csa01g00680 Csa-Chr1:4352931 Csa01g00687 Csa-Chr1:4371182 1.01E-166 proximal
Csa01g00398 Csa-Chr1:2483778 Csa01g00680 Csa-Chr1:4352931 1.28E-175 wgd
Csa01g00680 Csa-Chr1:4352931 Csa05g02634 Csa-Chr5:27440239 1.34E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77753 PF00069 Pkinase 1.60E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00680 - - csv:105436377 1271.91