Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00682 ATGAAAATTTCCCTCCCTCTCTTACTCTTCTTCAGAATCCTTTTGTTTCATCTTCATCTCTGTTTCGCCGATGCTGCCCACGATGAATTCAAAGCTTGCGGTGTGAATTACAACTGCGGTCAATTGGTTAACATCTCGTATCCATTTTGGGGGAATGATCGCCAATCTTTTTGCGGTCGCCGTGAATTCGGCCTCAGTTGCAAAAACAACGAAACCACTACCATTCATATCAATTCTTGGCCATATATTGTTGTGAACATCAGTCAATCGGATCATAGAATGACGATCGCAAGATCAGAGCTGTTCGATGATTACTGCCCTGACAAAGAAATTGGAGGGGGGGCGTTGGATTTTAGTCCGTTCAAGTATTCTAACAACGATCTGAATTTGTCCTTGTGGTACGATTGTCCGATACTGCTGGAAGTCCCGAAGTATTTCGTATTTGAGTGTGTATCGAAAGGGGAAAGAAGTGGGAGAACGAATTATGCTTTGGAGGAGTCTGAAACGACGAAATGGAGTCCATATAACAGAGAATGTGGAATTAAAATCGATGTGACGATTACCTCGGAGATATTTCAGGAAGGGAAAACGAACAGAACGGTGATGATGGAAAGGGGAATGAAAGAAGGGTTTGAAGTTGAATATGAGGACATTTACAGCACAGCTTGCGAGGCATGTAAGGAATACGGCGGGGCGTGTGGGAGAAACGCAACAAAAGAATTTCTATGCATTTGTAACAACGGAGAAGTACATCTTTATGTTTGCACACCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCGGGAAGAAGAAGAATATTGGCAAAGGCCTTCATAGGTGCATTTTCGGGAACTGGCGGTTTGATAATCTTTATAATCATCATCGCCATCTGCTACATGAGGAAAAACAAATCAAACAAAGACAACATTGAGGAGAGTATAAGAAGATATTCCATATTAATGCCCAAGCGATATAGTTACTCAAAGTTGAAGAAAATTACAGACTCCTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCACTATCTACCGAGGAAAGCTACCCGATGGACGTGACGTGGCTGTAAAACTTTTGAATGAGTCCAAAGAAAATGGCCAAGATTTCATCAACGAAGTTGTTAGCATCACCGGAACTTCGCATGTAAATATAGCCTCACTCATAGGTTTCTGCTACGAGAGGAAGAAGAGAGCTCTGATTTATGAATATATGCCTAGAGGGTCATTAGACCAATATATATCCCACAAAGGGCCACACAGAAACAACATTGAGCTGGATTGGAACACACTTCATAGCATCGTTATCGGTGTGGCACGAGGATTAGAATACTTGCACCGTGGTTGCATAACAATGATTTTACATTTTGACATTAAACCACACAACATACTTTTGGATAGTGATTTTTGTCCCAAGATCACAGACTTTGGGCTTGCCAAGCAATGTAGGGCTAGAGAAAGTCATGTAACAATGACGGGCGTGAAAGGGACGGTAGGATTTATTGCACCTGAAGTAATATTTAGGAGCTTTGGTAAGGTATCTCACAAGTCTGATGTATATAGCTATGGAATGTTAGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCAAATGATGGAGTGGGGCAAAGCAGTGGAGAGTACTTTCCTGATTGGATATACAATAATCTTACACAAAGTGAAATAGATGAAGGTTATTGTTTGCGGGGAAGCACAGAAGAAGAAAAAGAGATGACAAGAAAAATGATAATCGTGGGACTACATTGTATTCAAACATTGCCCGACGACAGGCCGTCGATGACCGACGTTATTGCAATGTTGGAAGGCAGTGGCGATGGCTTACAAATTCCACCGAAACCCAACTTGTTTGGACCTCCAACCTTTGAGCATCCCCAACCTTCTTCCTCTTCATCTAACGAAATTCCTAATGATAGTTTGATATTGTAG 1980 42.22 MKISLPLLLFFRILLFHLHLCFADAAHDEFKACGVNYNCGQLVNISYPFWGNDRQSFCGRREFGLSCKNNETTTIHINSWPYIVVNISQSDHRMTIARSELFDDYCPDKEIGGGALDFSPFKYSNNDLNLSLWYDCPILLEVPKYFVFECVSKGERSGRTNYALEESETTKWSPYNRECGIKIDVTITSEIFQEGKTNRTVMMERGMKEGFEVEYEDIYSTACEACKEYGGACGRNATKEFLCICNNGEVHLYVCTPPPPPSPPPPPPPPPPSPPGRRRILAKAFIGAFSGTGGLIIFIIIIAICYMRKNKSNKDNIEESIRRYSILMPKRYSYSKLKKITDSFKNKLGQGGFSTIYRGKLPDGRDVAVKLLNESKENGQDFINEVVSITGTSHVNIASLIGFCYERKKRALIYEYMPRGSLDQYISHKGPHRNNIELDWNTLHSIVIGVARGLEYLHRGCITMILHFDIKPHNILLDSDFCPKITDFGLAKQCRARESHVTMTGVKGTVGFIAPEVIFRSFGKVSHKSDVYSYGMLVLEMVGARKNPNDGVGQSSGEYFPDWIYNNLTQSEIDEGYCLRGSTEEEKEMTRKMIIVGLHCIQTLPDDRPSMTDVIAMLEGSGDGLQIPPKPNLFGPPTFEHPQPSSSSSNEIPNDSLIL* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4360196 4362429 - CsaV3_1G006820.1 Csa01g00682 515179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00682 659 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Csa01g00682 659 Pfam Wall-associated receptor kinase C-terminal 150 247 IPR032872 -
Csa01g00682 659 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 648 IPR045874 GO:0004672
Csa01g00682 659 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Csa01g00682 659 SMART serkin_6 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00682 659 MobiDBLite consensus disorder prediction 639 659 - -
Csa01g00682 659 Pfam Protein tyrosine and serine/threonine kinase 344 617 IPR001245 GO:0004672|GO:0006468
Csa01g00682 659 Gene3D Phosphorylase Kinase; domain 1 314 416 - -
Csa01g00682 659 Pfam Wall-associated receptor kinase galacturonan-binding 38 98 IPR025287 GO:0030247
Csa01g00682 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Csa01g00682 659 SUPERFAMILY Formin homology 2 domain (FH2 domain) 263 270 - -
Csa01g00682 659 ProSiteProfiles Protein kinase domain profile. 342 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00682 659 MobiDBLite consensus disorder prediction 622 659 - -
Csa01g00682 659 PANTHER - 15 648 - -
Csa01g00682 659 SUPERFAMILY Protein kinase-like (PK-like) 318 619 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00682 Csa-Chr1:4360196 Csa01g00685 Csa-Chr1:4367399 0 dispersed
Csa01g00677 Csa-Chr1:4341933 Csa01g00682 Csa-Chr1:4360196 1.29E-52 proximal
Csa01g00678 Csa-Chr1:4345978 Csa01g00682 Csa-Chr1:4360196 7.11E-103 proximal
Csa01g00680 Csa-Chr1:4352931 Csa01g00682 Csa-Chr1:4360196 2.49E-114 proximal
Csa01g00682 Csa-Chr1:4360196 Csa01g00684 Csa-Chr1:4364019 1.61E-92 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77754 PF07714 PK_Tyr_Ser-Thr 3.90E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00682 - - csv:101207814 1285.01