Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00685 ATGAAACCTTCCCTCCCTCAATTTCTCTTCTTCACAATCCTTTGGTTTGATTTTCATCTCTGTTTCAGCAATGACGCCAACGAGGAATTCAAAGCTTGTAGCGTGTATTACAGCTGCGGAGTTTTGGTTAACATCTCGTATCCATTCTGGGGGAATGAGCGGCAGCAATTCTGCGGTCGGCGAGAATTTGAACTTAATTGCAAAGACAACAAAACCACCACAATTCAAATCAATTCTGTGGAATATAACGTAGTGAACATCAACCAAACAGATCATAGCATGACGATCGCAAGATCGGATCTCCTCGATGATTACTGCCCTAAAATTCAAATAAAAACGGCGACGTTGGGTCACAATCTGTTCAAATACTCATCCAACGATCTGAATCTCTCCCTCTGGTACGATTGTCCAGTGCTAGAGGGAATCCGGCGGGAAATGACATTTGAGTGCGGATCGTCTGAAGGGGAGCGAAGAGGGAGAGTGAATTATGCTTTGGAGAAGAAGGACGCGATGAATTGGAGAAGAAACATGAGCGAGTGTAGAGTGAAAATGGAAGTGACAATCACGAAGGAGGTATTGACAGAAGGAGAAAAGAACAGAACGATGGTGGTGGAAAGGGGAATGAAAGAAGGGTTTGAAGTTGAATATGGGGATTTGTACACCATAGCTTGCGAGGGATGCAAGGAACAGGGCGGCGCATGTGGCGGAAACACGAGCAAAGAGTTTCGTTGCGTTTGTGGGAATGGAAATGTACATCCGTACATTTGCAAATCTTCTTCTTCCTCTTCTCCTCCTCCTCCTCCTCCCGCTGCACCATATCTAGATGTCATATGGCTGGATACCAAAACAGGAGGACCATATACAAACCATAGAAGAAAGTCTGCCATTATAGGAGGAACTTCTTCAGGAGGCTTCGTTTTAGTAATCTCCATTATCATCTTCATCTACTGGAAGAGAAAAAGAACCTCAAATAAAGACAAAATTGAGAAAATTATTAGAAGATATTCCATACAGACACCCAAGCGATACAGTTACTCTAAGTTAAAGAAAATCACAGACTGCTTCAACAACAAGCTTGGCCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCAAATGGATGTGATGTGGCTGTGAAACTTTTGAATGAATCCAGACAAGAAAATGGCCAAGATTTTATCAATGAAGTTGTTAGCATAGCCAAAACTTCACACATAAACATAGTCACACTCATAGGTTTCTGTTATGAGCAGAACAAAAGGGCTTTGATTTATGAATATATGCCTAAAGGGTCATTAGATAAGTACATATACCACAACAGGCTGCAAGAAAATGATATGAAGTTGGATTGGAACACACTTTATAACATCGTTATTGGAGTGGCACGAGGCTTAGAGTACTTGCATCGTGGTTGCAACACAAGGATTTTGCATTTTGACATCAAACCACATAACATTCTTTTGGATAGTGATTTTTGTCCCAAGATTTCAGATTTTGGACTTGCCAAGCAATGTGAGGCAAGAGAAAGTCACGTGTCGATGACAGGCGTGAAAGGGACGATAGGATTTATTGCACCCGAAGTAATATTCAGGAACTCTGGCAAGGTTTCTCACAAGTCTGATGTGTATAGTTATGGAATGTTGATTCTTGAAATGGTGGGAGCAAGAAAGAAGCCCAATGAAGGAGTGGAGCAAAAGAGTGAAGCGTATTTTCCAGATTGGATATATAAGGATCTTACACAAAGTGAAATAGATGGAGGATGTTGGTGGGGAAACACAAAAGAAGAAGAAGAAATGGCAAGAAAAATGATCATCGTGGGACTGCATTGTATACAGACACTGCCTGACGACAGGCCATCGATGACCAATGTGGTTGTGATGTTGGAAGGCAGTGTTGATGTCTTACAGATTCCACCAAAACCCAACATGTACGGACCTCCAAACATTGAACAGCCTCAAGCTTCTTTTTCCTCTTTGTCCAACAAAATCCCTAGTATCAGTTTGATACACTCTAGCAGAGAAGCAACACAACAATAG 2040 41.76 MKPSLPQFLFFTILWFDFHLCFSNDANEEFKACSVYYSCGVLVNISYPFWGNERQQFCGRREFELNCKDNKTTTIQINSVEYNVVNINQTDHSMTIARSDLLDDYCPKIQIKTATLGHNLFKYSSNDLNLSLWYDCPVLEGIRREMTFECGSSEGERRGRVNYALEKKDAMNWRRNMSECRVKMEVTITKEVLTEGEKNRTMVVERGMKEGFEVEYGDLYTIACEGCKEQGGACGGNTSKEFRCVCGNGNVHPYICKSSSSSSPPPPPPAAPYLDVIWLDTKTGGPYTNHRRKSAIIGGTSSGGFVLVISIIIFIYWKRKRTSNKDKIEKIIRRYSIQTPKRYSYSKLKKITDCFNNKLGQGGFSTVYKGKLPNGCDVAVKLLNESRQENGQDFINEVVSIAKTSHINIVTLIGFCYEQNKRALIYEYMPKGSLDKYIYHNRLQENDMKLDWNTLYNIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDSDFCPKISDFGLAKQCEARESHVSMTGVKGTIGFIAPEVIFRNSGKVSHKSDVYSYGMLILEMVGARKKPNEGVEQKSEAYFPDWIYKDLTQSEIDGGCWWGNTKEEEEMARKMIIVGLHCIQTLPDDRPSMTNVVVMLEGSVDVLQIPPKPNMYGPPNIEQPQASFSSLSNKIPSISLIHSSREATQQ* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4367399 4370158 - CsaV3_1G006850.1 Csa01g00685 515182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00685 679 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Csa01g00685 679 Gene3D Phosphorylase Kinase; domain 1 325 428 - -
Csa01g00685 679 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 659 IPR045874 GO:0004672
Csa01g00685 679 Pfam Wall-associated receptor kinase C-terminal 163 248 IPR032872 -
Csa01g00685 679 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Csa01g00685 679 CDD STKc_IRAK 359 631 - -
Csa01g00685 679 SUPERFAMILY Protein kinase-like (PK-like) 330 630 IPR011009 -
Csa01g00685 679 SMART serkin_6 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00685 679 PANTHER - 16 659 - -
Csa01g00685 679 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
Csa01g00685 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Csa01g00685 679 ProSiteProfiles Protein kinase domain profile. 353 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00685 679 Pfam Protein kinase domain 357 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00678 Csa-Chr1:4345978 Csa01g00685 Csa-Chr1:4367399 1.77E-103 dispersed
Csa01g00682 Csa-Chr1:4360196 Csa01g00685 Csa-Chr1:4367399 0 dispersed
Csa01g00685 Csa-Chr1:4367399 Csa05g02636 Csa-Chr5:27446431 1.02E-172 dispersed
Csa03g04398 Csa-Chr3:38370268 Csa01g00685 Csa-Chr1:4367399 5.56E-72 dispersed
Csa01g00685 Csa-Chr1:4367399 Csa01g00688 Csa-Chr1:4372170 6.59E-19 proximal
Csa01g00684 Csa-Chr1:4364019 Csa01g00685 Csa-Chr1:4367399 1.74E-89 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77756 PF00069 Pkinase 1.90E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00685 - - csv:105434802 1389.79