Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00687 ATGTACATCACCGTACTCGAGTATGAAGTTTTGAATTCAATATTTGATCTCTTCGCAGGCAAACTTTCAGATGGGCGTGAGGTTGCAGTGAAACGATTGTTTGAAAATAACTACCGACGAGTTGAGCATTTCATGAATGAAGTTGAGGTCCTTACTCGATTGCGCCACCCACATCTAGTCACCCTTTATGGATGTACCTCTCGAATTTGCCGTGAACTTTTGCTGGTTTATGAATTCATTCCAAATGGTACTGTGGCCGATCATCTTCATGGCAACCGAGCAAAACCTGGTGAGCTTCCATGGCATACAAGGTTGAAGATTGCCATAGACACAGCAAGTGCTCTCGCTTTTCTTCATGCTTCCGAGACTATCCACCGAGATGTTAAAACTACCAACATTCTTCTTGACAACAACTACAACGTTAAAGTCGCCGATTTCGGACTATCTCGCCTTTTTCCTACACAAGCCACCCATATATCAACTGCTCCACAGGGAACTCCTGGCTACGTTGACCCGGAGTATCACGAATGTTATCAACTTACAAATAAAAGCGATGTCTTTAGCTTTGGAGTAGTATTGGTTGAGCTGATATCTTCAAAGCCTGCAGTTGATATCACTAGGCACAGACATGAGATTAACTTGTGGACAATGGCAATCAACAAGATTCGAAATGACGAATTACACGACTTCGTAGATGCATCTCTTGGATTTGAAACAGATGAAACAGTGAGAGAGATGATATGTGCAGTTGCAGAGTTGGCATTTCGATGCTTACAAAGTGTGAAGGACACAAGACCGTCGATGTTGGAAGCTCTGGAAATTCTAAAGAACATAGAGAGTCGAAGTAGTGGCAAAGGAAAAGAAGAAGACAGAGACATTTCACACGAAGACGATGTGCTGCTGAAGGATGGTTTAGTTCCAGAGTCTCCAGATTCCGTTGTCGTGCCTTGGATGAGTAAATCATCAACACCAAATGGCAGTAGCTAA 987 42.96 MYITVLEYEVLNSIFDLFAGKLSDGREVAVKRLFENNYRRVEHFMNEVEVLTRLRHPHLVTLYGCTSRICRELLLVYEFIPNGTVADHLHGNRAKPGELPWHTRLKIAIDTASALAFLHASETIHRDVKTTNILLDNNYNVKVADFGLSRLFPTQATHISTAPQGTPGYVDPEYHECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLWTMAINKIRNDELHDFVDASLGFETDETVREMICAVAELAFRCLQSVKDTRPSMLEALEILKNIESRSSGKGKEEDRDISHEDDVLLKDGLVPESPDSVVVPWMSKSSTPNGSS* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4371182 4372168 - CsaV3_1G006870.1 Csa01g00687 515184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00687 328 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 18 319 - -
Csa01g00687 328 MobiDBLite consensus disorder prediction 281 328 - -
Csa01g00687 328 MobiDBLite consensus disorder prediction 281 304 - -
Csa01g00687 328 Pfam Protein tyrosine and serine/threonine kinase 23 273 IPR001245 GO:0004672|GO:0006468
Csa01g00687 328 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00687 328 Gene3D Phosphorylase Kinase; domain 1 14 80 - -
Csa01g00687 328 Gene3D Transferase(Phosphotransferase) domain 1 81 302 - -
Csa01g00687 328 SMART serkin_6 8 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00687 328 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 319 IPR044652 -
Csa01g00687 328 SUPERFAMILY Protein kinase-like (PK-like) 21 278 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00687 Csa-Chr1:4371182 Csa04g01858 Csa-Chr4:18320320 2.38E-131 dispersed
Csa01g00680 Csa-Chr1:4352931 Csa01g00687 Csa-Chr1:4371182 1.01E-166 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77757 PF07714 PK_Tyr_Ser-Thr 3.90E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00687 - - csv:101208057 626.32