Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00689 ATGACTATCAGAACGCCTGCAACTCCAGCTTCTAAAATAGAGAGGACGCCAGCGTCAACACCTGGAGGACCTCGATCTAAGGAAGAAAAGATCGTTGTTACTGTGCGGTTAAGGCCTCTGAGTAAAAAGGAGCAGCAAGCGAAGGATCAAATGGCATGGGAGTGCATTGATGATAATACGATTGTGTACAAATCTCAGCCTCAGGAACGTCAAACTCAACCGGCCTCGTTCACATTTGATAAAGTTTTCAGTCCCGCTTCTTTGACTGAAGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTGCTCTAATGGGCATCAACGCCACCATATTCGCTTATGGGCAAACTAGTAGTGGAAAGACATTTACAATGAGGGGGATAACTGAGAAAGCTGTTAATGATATCTACAAACATATTAGTAATACACCCGAGAGAGATTTTACAATAAGAATTTCAGGACTTGAAATATACAATGAGAACGTCAGGGATCTATTGAATACAGAATCAGGTCGGAATCTAAAGCTTCATGATGACCCAGAGAAAGGTACAATGGTTGAGAAACTAGTAGAGGAAACCGCGAATAATGATCAACATTTAAGACAATTGATTAGCATCTGTGAGGCTCAAAGACAAGTTGGTGAAACTGCCTTGAATGACTATAGCTCTCGGTCACACCAGATAATAAGGCTGACAATTCAAAGTACCCTACGAGAAAATTCAGATTGTGTTAGGTCTTTTGTAGCAAGCTTGAATTTTGTTGATTTAGCTGGAAGTGAGAGAGCTTCACAAACACATGCTGATGGTGCTAGGCTAAGAGAAGGCTGTCATATTAACCTTAGTTTGATGACGCTCACAACTGTGATCAGAAAGCTAAGTCTTGGAAAGAGAAGTGGCCATATACCTTATAGAGACTCAAAACTCACCCGCATATTGCAGCATTCGCTTGGTGGAAATGCACGAACCGCCATTATATGCACATTGAGTCCAGCATTGACTCATGTTGAACAATCTCGGAATACTTTGTACTTTGCCACCCGGGCAAAGGAAGTGACTAATAACGCCCAAGTTAATATGGTTGTGTCGGACAAACAATTGGTCAAACATTTACAGAAGGAAGTTGCCAGGCTAGAAGCAGAACTGCGCACTCCTGATCCAAAACGGGAGAAAGATCTAAAAATCCAACAGATGGAAATGGAGATTGAAGAATTAAAACGAGAAAGAGACCTTGCCCAATCCCAGGTTGATGAGCTCCGCAGAAAACTTGAGGAGGACCAGCAGGGTTTTAACCCAATTGAATCTACCCGTCCTCCAGTGAAGAAGTGTTTGTCCTTTACTGGTGCATTGTCTCAGAGACTCGACAGCAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCAATGATGAGACAATCATCTACTGCTCCTTTCACACTTATGCATGAAATTCGTAAGCTGGAACATCTCCAGGAGCAGCTAGGGGAGGAAGCTAATAGAGCCCTCGAAGTATTGCAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCCGCAGAAACAATTGCCAAACTACAAGCTGAAATAAGAGAAATGAGATCAGTCCGTTCAGAGCCCAAAGAGGTTGAGGTTGGGAGTGTTATTGCTACTAACCAGAGTGTAGGTGCTAATCTTAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCCAATTTAGAAGAGCAGCTTGAAAATGTTCAGAAGTCTATTGACAAGTTGGTAATGTCTCTGCCAAGTAATTATCAGCAGTTCATGAGCAGTGAATCAACTCCCAAACAAAAAAGTTCCACAAAAAAGAAGAAATTGCTTCCTTTGGCCTCAAGTAATATTACCAACCGGCAAAACTTTTTAAGATCTCCATGCTCACCTTCAACAACTTCCCAACAAGTACTGGAGTCCGATATTGAAAATAGAGCTCCTGAGAATGATGATGTCATCTCATCTGAGATTTTGCGCGAGTCTGAGAAAGAGACCCCAACAAAGAGTGAAGAAGGTGGAGATGTCTCATCAAAAGAGAGCACTCCTTGTTATCGAAGATCAAGTTCTGTAAACATGAAGAAAATGCAAAAGATGTTCCAAAATGCAGCAGAAGAAAACGTAAGAAGCATAAGAGCATATGTGACAGAATTGAAAGAACGTGTGGCCAAACTTCAGTATCAAAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTGGAAGCAAATGAAGCAGCTGGCAACAAATTAGATTGTGATGAAAACACATTTGACCAGGATGACGATCAAGTTCCGTGGCATTTAACTTTCAGGGAGCAAAGGCAGCAGATTATTGAGTTATGGGATGCTTGCTATGTTTCCATTATTCACAGGTCTCAGTTCTACTTGTTATTCAAGGGCGACGAGGCTGATCAGATTTACCTGGAAGTAGAGATGAGGCGATTAACATGGTTGCACGATCACCTAGCGGAATTTGGCAATGCTAGTCCAGCTCACGTTGGAGATGAGCCAACAATCTCTCGCTCGTCAAGCATGAGAGCGTTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACTACACGTTTGACAGCAGAAGAAAGAGATGCGTTGTACATTAAATGGGAAGTACCGCTTGAAGGGAAACAAAGGAAAATCCAATTTGTAAACAAGCTCTGGACGAATCCTCACGACCCCAAGCATATTCAGGACAGTGCAGAGATAGTGGCAAAGCTTGTTGGGTTTCGTGAAGGAGGCAACATGTCCAGGGAGATGTTTGAACTCAATTTTGTTGTTCCTTCCGACAAAAGACCATGGATCATGGGATGGAACCCAATTTCAAACCTTCTTAATTTGTAA 2883 42.49 MTIRTPATPASKIERTPASTPGGPRSKEEKIVVTVRLRPLSKKEQQAKDQMAWECIDDNTIVYKSQPQERQTQPASFTFDKVFSPASLTEAVYEEGVKNVALSALMGINATIFAYGQTSSGKTFTMRGITEKAVNDIYKHISNTPERDFTIRISGLEIYNENVRDLLNTESGRNLKLHDDPEKGTMVEKLVEETANNDQHLRQLISICEAQRQVGETALNDYSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSLGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKREKDLKIQQMEMEIEELKRERDLAQSQVDELRRKLEEDQQGFNPIESTRPPVKKCLSFTGALSQRLDSKDLGRGMILRQSMMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSEPKEVEVGSVIATNQSVGANLKEEITRLHSQGSTIANLEEQLENVQKSIDKLVMSLPSNYQQFMSSESTPKQKSSTKKKKLLPLASSNITNRQNFLRSPCSPSTTSQQVLESDIENRAPENDDVISSEILRESEKETPTKSEEGGDVSSKESTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENTFDQDDDQVPWHLTFREQRQQIIELWDACYVSIIHRSQFYLLFKGDEADQIYLEVEMRRLTWLHDHLAEFGNASPAHVGDEPTISRSSSMRALRREREFLAKRLTTRLTAEERDALYIKWEVPLEGKQRKIQFVNKLWTNPHDPKHIQDSAEIVAKLVGFREGGNMSREMFELNFVVPSDKRPWIMGWNPISNLLNL* 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4380893 4384939 + CsaV3_1G006890.1 Csa01g00689 515186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00689 960 Pfam Kinesin motor domain 36 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 Coils Coil 516 536 - -
Csa01g00689 960 MobiDBLite consensus disorder prediction 1 15 - -
Csa01g00689 960 MobiDBLite consensus disorder prediction 653 685 - -
Csa01g00689 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 387 IPR027417 -
Csa01g00689 960 ProSiteProfiles Kinesin motor domain profile. 30 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 Coils Coil 388 429 - -
Csa01g00689 960 Gene3D Kinesin motor domain 23 383 IPR036961 -
Csa01g00689 960 MobiDBLite consensus disorder prediction 601 699 - -
Csa01g00689 960 PRINTS Kinesin heavy chain signature 107 128 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 PRINTS Kinesin heavy chain signature 251 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 PRINTS Kinesin heavy chain signature 302 323 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 Coils Coil 361 381 - -
Csa01g00689 960 SMART kinesin_4 28 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00689 960 ProSitePatterns Kinesin motor domain signature. 250 261 IPR019821 GO:0003777|GO:0005524|GO:0007018
Csa01g00689 960 CDD KISc_CENP_E 30 352 - -
Csa01g00689 960 PANTHER CENTROMERE PROTEIN E 14 959 - -
Csa01g00689 960 Pfam Domain of unknown function (DUF3490) 778 940 IPR021881 -
Csa01g00689 960 PANTHER KINESIN-LIKE PROTEIN KIN-7A 14 959 - -
Csa01g00689 960 Coils Coil 487 507 - -
Csa01g00689 960 Coils Coil 566 593 - -
Csa01g00689 960 MobiDBLite consensus disorder prediction 617 652 - -
Csa01g00689 960 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00689 K11498 CENPE; centromeric protein E - csv:101215425 1850.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00689 Csa-Chr1:4380893 Csa05g01950 Csa-Chr5:22781800 0 dispersed
Csa06g02142 Csa-Chr6:19149095 Csa01g00689 Csa-Chr1:4380893 1.00E-77 dispersed
Csa01g00689 Csa-Chr1:4380893 Csa07g00039 Csa-Chr7:486158 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00689 Csa_Chr01 FPKM 0.0 0.0 0.0 0.409491 0.0 0.0 0.0 0.0 0.0 0.844001